miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 131664 1.17 0.033108
Target:  5'- aCCCUUUAACACCUAAGCUAUACAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 184861 1.08 0.098963
Target:  5'- aCCCUUUAACACCUAAGCUGUAUAUAUg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 90004 1.06 0.117647
Target:  5'- aCCCUUUAACACCUAAGUUAUAUAUGCa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 111229 1.06 0.128179
Target:  5'- aCCUUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 97436 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGuAUG- -5'
28256 3' -42 NC_005902.1 + 50210 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 60466 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 97175 1.05 0.147684
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 172815 1.05 0.147684
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 47235 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAcACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 23256 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUucACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 120245 1.02 0.200356
Target:  5'- aCCCUUUAACACCUGAGCUAUAugcuCAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAU----GUAUG- -5'
28256 3' -42 NC_005902.1 + 42977 1.02 0.205881
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAUAUg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 81836 1.01 0.211537
Target:  5'- uCCCUUUAACACCUAAGCUAUAUAaACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 114544 1.01 0.217326
Target:  5'- cCCCUUUAACACCUAGGCUAUAUAaACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 48253 1.01 0.223251
Target:  5'- aUCCUUUAACACUUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 169123 1 0.235511
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUu- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 100669 1 0.241851
Target:  5'- aCCCUUUAAUAUCUAAGCUAUAUAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 23607 1 0.254956
Target:  5'- aCUCUUUAACACCUAAGCUAUACAcACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 54050 1 0.254956
Target:  5'- aUCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.