miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 51424 0.67 1
Target:  5'- ---gUUAAUAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 111390 0.67 1
Target:  5'- uCgCUUUAACaccACCUAAGUUAUAUAc-- -3'
miRNA:   3'- -GgGAAAUUG---UGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 137625 0.67 1
Target:  5'- aCCCUU---UACCUAAGUaUAUACAa-- -3'
miRNA:   3'- -GGGAAauuGUGGAUUCG-AUAUGUaug -5'
28256 3' -42 NC_005902.1 + 116672 0.67 1
Target:  5'- uUUUUUAACACCUGaAGCU-UAUAUAg -3'
miRNA:   3'- gGGAAAUUGUGGAU-UCGAuAUGUAUg -5'
28256 3' -42 NC_005902.1 + 23414 0.67 1
Target:  5'- ---gUUAACACCcAAGCUAUAUacaaacaaGUACa -3'
miRNA:   3'- gggaAAUUGUGGaUUCGAUAUG--------UAUG- -5'
28256 3' -42 NC_005902.1 + 98888 0.67 1
Target:  5'- ---aUUAACuCCUAAGUUAUAUAUAa -3'
miRNA:   3'- gggaAAUUGuGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 68959 0.67 1
Target:  5'- ---gUUAAUACUUAAGCUAUAUAa-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 62673 0.67 1
Target:  5'- cCCCUUUAAaacUAUCUAaaaaAGCUGUAUuugACa -3'
miRNA:   3'- -GGGAAAUU---GUGGAU----UCGAUAUGua-UG- -5'
28256 3' -42 NC_005902.1 + 162808 0.67 1
Target:  5'- ---gUUAAUAUCUAAGCU-UGCAUAUa -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAuAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 107242 0.67 1
Target:  5'- aCCCUUUAACuCUUAAGgUGUuaucaACAaUGCa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUCgAUA-----UGU-AUG- -5'
28256 3' -42 NC_005902.1 + 39414 0.68 1
Target:  5'- -----gAAUACCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaaaUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 110863 0.68 1
Target:  5'- aCUUUUAACucuuuACCUAAGUUAUAUAg-- -3'
miRNA:   3'- gGGAAAUUG-----UGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 140686 0.68 1
Target:  5'- cUCUUUUAACAUCcAAGCUAUAaauaaAUAUa -3'
miRNA:   3'- -GGGAAAUUGUGGaUUCGAUAUg----UAUG- -5'
28256 3' -42 NC_005902.1 + 165879 0.68 1
Target:  5'- aCCCUUUAACuuCUAAGgUGU-CAUuaACa -3'
miRNA:   3'- -GGGAAAUUGugGAUUCgAUAuGUA--UG- -5'
28256 3' -42 NC_005902.1 + 118825 0.68 1
Target:  5'- aCUCUUUAACuCCUAAggcauuGUUAUugAUGCc -3'
miRNA:   3'- -GGGAAAUUGuGGAUU------CGAUAugUAUG- -5'
28256 3' -42 NC_005902.1 + 22553 0.68 1
Target:  5'- aUCCUUUAAauCCUAAgGCUAUACuuguuUGCu -3'
miRNA:   3'- -GGGAAAUUguGGAUU-CGAUAUGu----AUG- -5'
28256 3' -42 NC_005902.1 + 77101 0.68 1
Target:  5'- ----cUAACACUUAAGCU-UAUAUACu -3'
miRNA:   3'- gggaaAUUGUGGAUUCGAuAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 24305 0.68 1
Target:  5'- aCUCUUUAACA-CUAGGCcAUACAc-- -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGaUAUGUaug -5'
28256 3' -42 NC_005902.1 + 107372 0.68 1
Target:  5'- aCCCUUUAaauccuagggcuuAUACUUGuuuGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAU-------------UGUGGAUu--CGAUAUGuAUG- -5'
28256 3' -42 NC_005902.1 + 27864 0.68 1
Target:  5'- aCCCUUUAaaucuuaaggcuuAUACUUGuuuGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAU-------------UGUGGAUu--CGAUAUGuAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.