miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 11043 0.71 0.999995
Target:  5'- ---gUUAACACUUAAGUUAUAUAUGa -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 11282 0.82 0.950069
Target:  5'- aCUCUUUAACACUUAAG-UGUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCgAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 11406 0.85 0.840979
Target:  5'- aCUCUUUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 11493 0.78 0.992443
Target:  5'- aCUUUUUAAUAUCUAAGCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 12542 0.77 0.994445
Target:  5'- aCCCUUUAAUACCUAAauuaUAUACAaACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcg--AUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 12825 0.91 0.597857
Target:  5'- aCCCUUUAACuCCUAAGUUAUAUAUAUa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 13182 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 13398 0.81 0.966173
Target:  5'- aCCU--AAUACCUAAGCUAUAUAUGu -3'
miRNA:   3'- gGGAaaUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 15149 0.81 0.9545
Target:  5'- aCCUUUUAACAUgUAAGCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAUUGUGgAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 15310 0.7 0.999998
Target:  5'- ---aUUAACACCUGAaUUAUAUAUGCa -3'
miRNA:   3'- gggaAAUUGUGGAUUcGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 15423 0.98 0.305422
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 15695 0.7 0.999998
Target:  5'- aCUUUUAACACCUAAGauuUAUAgACa -3'
miRNA:   3'- gGGAAAUUGUGGAUUCgauAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 16464 0.81 0.9545
Target:  5'- aCCUUUUAACACCUAAaCUAUACAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 16514 0.76 0.998045
Target:  5'- aCCCUgUAACACCUGAGaUAUAUAg-- -3'
miRNA:   3'- -GGGAaAUUGUGGAUUCgAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 16804 0.66 1
Target:  5'- aCCCUUUAACuCCUAAGgCaucAUugAUGa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUC-Ga--UAugUAUg -5'
28256 3' -42 NC_005902.1 + 16876 0.92 0.531605
Target:  5'- aUCCUUUAACACCUAAGCUAUaucaaguaaGCAUAUc -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUA---------UGUAUG- -5'
28256 3' -42 NC_005902.1 + 16888 0.77 0.995271
Target:  5'- aCUUUUAACAUCUAAGCUAUgaACAa-- -3'
miRNA:   3'- gGGAAAUUGUGGAUUCGAUA--UGUaug -5'
28256 3' -42 NC_005902.1 + 18749 0.93 0.488924
Target:  5'- aCCCUUUAACACCUAAGUUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 18856 0.95 0.399469
Target:  5'- aCCUUUUAACACCUAAGCUAUAUAcGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 20061 0.8 0.978214
Target:  5'- aCCCUUUAACACaUAAGCcaUAUACAaACa -3'
miRNA:   3'- -GGGAAAUUGUGgAUUCG--AUAUGUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.