miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 20280 0.89 0.676335
Target:  5'- aUCCUUUAACACCUAAGUUA-ACAUAUa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 21167 0.97 0.337544
Target:  5'- uCCCUUUAACACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 21309 0.87 0.773464
Target:  5'- aCCUUUUAACAUCUAAGCUAUAUAcucuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGU----AUG- -5'
28256 3' -42 NC_005902.1 + 22553 0.68 1
Target:  5'- aUCCUUUAAauCCUAAgGCUAUACuuguuUGCu -3'
miRNA:   3'- -GGGAAAUUguGGAUU-CGAUAUGu----AUG- -5'
28256 3' -42 NC_005902.1 + 22601 0.81 0.9532
Target:  5'- gCCUuaggauuuaaagggUUAACACCUAAGCUAUAUAuuUACu -3'
miRNA:   3'- gGGA--------------AAUUGUGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 23217 0.67 1
Target:  5'- aCUUUcUAAUAUCUAAGCUAUAU--GCa -3'
miRNA:   3'- gGGAA-AUUGUGGAUUCGAUAUGuaUG- -5'
28256 3' -42 NC_005902.1 + 23256 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUucACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 23287 0.95 0.40889
Target:  5'- aUCCUUUAAUACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 23313 0.73 0.999876
Target:  5'- ----aUAACAUCUAAGCUAUAUGUAa -3'
miRNA:   3'- gggaaAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 23348 0.66 1
Target:  5'- aCCCUUUAACcCCUuuAAGCgaugACAc-- -3'
miRNA:   3'- -GGGAAAUUGuGGA--UUCGaua-UGUaug -5'
28256 3' -42 NC_005902.1 + 23414 0.67 1
Target:  5'- ---gUUAACACCcAAGCUAUAUacaaacaaGUACa -3'
miRNA:   3'- gggaAAUUGUGGaUUCGAUAUG--------UAUG- -5'
28256 3' -42 NC_005902.1 + 23465 0.85 0.849792
Target:  5'- gCCCUUUAACACCUAAuCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 23607 1 0.254956
Target:  5'- aCUCUUUAACACCUAAGCUAUACAcACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 23833 0.74 0.999728
Target:  5'- --aUUUAACAUUUAAGCUAUAUAUAa -3'
miRNA:   3'- gggAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 23978 0.73 0.999876
Target:  5'- aUCCUUUAACAUCUAAaCUAUAUAa-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 24305 0.68 1
Target:  5'- aCUCUUUAACA-CUAGGCcAUACAc-- -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGaUAUGUaug -5'
28256 3' -42 NC_005902.1 + 25068 0.72 0.999972
Target:  5'- cCCCUUUAACuCCUaAAGCguuguugacgAUACAUAg -3'
miRNA:   3'- -GGGAAAUUGuGGA-UUCGa---------UAUGUAUg -5'
28256 3' -42 NC_005902.1 + 25119 0.84 0.890128
Target:  5'- aCCCUUUAAC-UCUAuGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGuGGAUuCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 26258 0.8 0.980651
Target:  5'- aCCCUUUAAUACUU-AGCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAuUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 26885 0.66 1
Target:  5'- aCCUUUuAUGCCUGGuGCUAUGUGUAUc -3'
miRNA:   3'- gGGAAAuUGUGGAUU-CGAUAUGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.