miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 145945 0.93 0.510078
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 40967 0.97 0.354503
Target:  5'- aCCCUUUAAUACCUAAGCUAUAUAcACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 97175 1.05 0.147684
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 143018 0.93 0.510078
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 97436 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGuAUG- -5'
28256 3' -42 NC_005902.1 + 109916 0.89 0.69853
Target:  5'- aCCCUUUAAgACCUAAGCUAUAU--GCa -3'
miRNA:   3'- -GGGAAAUUgUGGAUUCGAUAUGuaUG- -5'
28256 3' -42 NC_005902.1 + 47235 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAcACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 20280 0.89 0.676335
Target:  5'- aUCCUUUAACACCUAAGUUA-ACAUAUa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 48379 0.9 0.620278
Target:  5'- aCCCUUUAACACCUAAGUUAU--GUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAugUAUG- -5'
28256 3' -42 NC_005902.1 + 114811 0.91 0.586688
Target:  5'- aCCCUUUAACACUUAGGUUAUAUAUGu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 142154 0.92 0.553451
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 36162 0.92 0.542492
Target:  5'- cCCUUUUAACAUCUAAGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 172605 0.93 0.520798
Target:  5'- aCCCUUUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 3077 0.93 0.510078
Target:  5'- --aUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- gggAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 61523 0.94 0.478502
Target:  5'- aCCCUUUAAUACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 166127 0.95 0.40889
Target:  5'- aCCCUUUAAUACUUAAGCUAuaUACAUGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAU--AUGUAUG- -5'
28256 3' -42 NC_005902.1 + 30797 0.96 0.390188
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAcGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 85905 0.98 0.313228
Target:  5'- cCCCUUUAACAUCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 128772 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 137773 0.99 0.275698
Target:  5'- aCUUUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.