miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 175938 0.73 0.999838
Target:  5'- aCCCUUUAACuCCUAAGgUAU-CAUcaACa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUCgAUAuGUA--UG- -5'
28256 3' -42 NC_005902.1 + 175612 0.8 0.97267
Target:  5'- aCCCUUUAAUACgUAAGCcgUAUACAaACa -3'
miRNA:   3'- -GGGAAAUUGUGgAUUCG--AUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 174974 0.69 1
Target:  5'- ----cUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaaAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 174591 0.85 0.849792
Target:  5'- aCCgagUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- gGGa--AAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 174463 0.75 0.99868
Target:  5'- aUCUUUUuACAUCUAAGCUAUAUAcuUACu -3'
miRNA:   3'- -GGGAAAuUGUGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 173873 0.7 0.999998
Target:  5'- aCCUuaggauuuauagagUUAAUACUUAAGCUAUauacucauuuaACAUGCu -3'
miRNA:   3'- gGGA--------------AAUUGUGGAUUCGAUA-----------UGUAUG- -5'
28256 3' -42 NC_005902.1 + 173178 0.76 0.998388
Target:  5'- aCCCcUUAACuCCUAAGUUAUAUAcACg -3'
miRNA:   3'- -GGGaAAUUGuGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 172815 1.05 0.147684
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 172711 0.74 0.999772
Target:  5'- gCCUUagggguuaacuuuaUAAUACCUAAGUUAUAUAUGu -3'
miRNA:   3'- gGGAA--------------AUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 172605 0.93 0.520798
Target:  5'- aCCCUUUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 170848 0.85 0.849792
Target:  5'- aCCCUUUAACAUgUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGgAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 170700 0.97 0.329288
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 170586 0.82 0.950069
Target:  5'- aCCUUgUAACACCUGAcCUAUAUAUGCu -3'
miRNA:   3'- gGGAA-AUUGUGGAUUcGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 170532 0.9 0.642742
Target:  5'- aCCUUUUAACACCUAAaCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 169983 0.72 0.999962
Target:  5'- aCCCUU---UAUCUAAGCUAUAUAUuCa -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUAuG- -5'
28256 3' -42 NC_005902.1 + 169551 0.72 0.999948
Target:  5'- ---gUUAAUGCUUAAGCUAuaUACAUGCg -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAU--AUGUAUG- -5'
28256 3' -42 NC_005902.1 + 169511 0.94 0.478502
Target:  5'- aCUCUUUAACACCUGAGCUAUAUAUc- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 169442 0.94 0.457994
Target:  5'- aCCCUUUAACACUUAAGCUGUAUAUu- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5'
28256 3' -42 NC_005902.1 + 169125 0.79 0.982879
Target:  5'- uUCUUUAACAUUUAAGCUAUAUAgACa -3'
miRNA:   3'- gGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 169123 1 0.235511
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUu- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.