miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 184861 1.08 0.098963
Target:  5'- aCCCUUUAACACCUAAGCUGUAUAUAUg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 184807 0.68 1
Target:  5'- aCUCUUcAACACUUAAaacaUAUACAUGCu -3'
miRNA:   3'- -GGGAAaUUGUGGAUUcg--AUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 184749 0.92 0.531605
Target:  5'- aUCCU--AACACCUGAGCUAUAUAUACu -3'
miRNA:   3'- -GGGAaaUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 184591 0.79 0.982879
Target:  5'- -gCUUUAACACUUAAGCUAUAUAc-- -3'
miRNA:   3'- ggGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 184373 0.72 0.999948
Target:  5'- aCCUUUUAACACCc--GUUAUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGauuCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 182934 0.87 0.793687
Target:  5'- -aUUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- ggGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 182565 0.81 0.958658
Target:  5'- -aUUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- ggGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 181392 0.67 1
Target:  5'- -gCUUUAAUcCCUAAGUUAUAUAaACu -3'
miRNA:   3'- ggGAAAUUGuGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 181227 0.79 0.982879
Target:  5'- gCCUUUAACuCCUAAGUUAUAUAcuUGCu -3'
miRNA:   3'- gGGAAAUUGuGGAUUCGAUAUGU--AUG- -5'
28256 3' -42 NC_005902.1 + 180883 0.79 0.988411
Target:  5'- aCCCUUUAACAUCUAAGCaAUaucacaagugaGCAUAa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGaUA-----------UGUAUg -5'
28256 3' -42 NC_005902.1 + 180827 0.76 0.99717
Target:  5'- aCCU--AACACCUAAGCg--AUAUACu -3'
miRNA:   3'- gGGAaaUUGUGGAUUCGauaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 180621 0.81 0.962546
Target:  5'- uUCUUUAACACCUAAGCU-UAUAUGa -3'
miRNA:   3'- gGGAAAUUGUGGAUUCGAuAUGUAUg -5'
28256 3' -42 NC_005902.1 + 180351 0.77 0.995994
Target:  5'- uUCUUUAACcCCUAAGCUAUAUAc-- -3'
miRNA:   3'- gGGAAAUUGuGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 179810 0.83 0.911106
Target:  5'- aCCCUUUAACAaCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 179695 0.92 0.553451
Target:  5'- aUCCUUUAAaACCUAAGCUAUAUAUACu -3'
miRNA:   3'- -GGGAAAUUgUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 179474 0.74 0.999789
Target:  5'- ---gUUAACACCUAAGUuauuUAUAUAUACu -3'
miRNA:   3'- gggaAAUUGUGGAUUCG----AUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 178411 0.66 1
Target:  5'- aCCUUUUAAUACUUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 177828 0.66 1
Target:  5'- ---aUUAACuuuGCCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaAAUUG---UGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 177589 0.75 0.998925
Target:  5'- aCCUUUUAACACCUAAaCUAUuauuugAUAUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUA------UGUAUG- -5'
28256 3' -42 NC_005902.1 + 177325 0.84 0.8974
Target:  5'- aUCCUUUAACACCUAAGUuuauuUGUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCG-----AUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.