miRNA display CGI


Results 61 - 80 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 174663 0.73 0.948477
Target:  5'- uACCCUUUAAUUCCAUauUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 67778 0.73 0.948477
Target:  5'- uAUCCUUUAACUCUAcacUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67423 0.73 0.952866
Target:  5'- uAUCCUUUAACUCUAUacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 63107 0.69 0.996604
Target:  5'- aACCCUUUAACUUUuaagGCaUCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUua -5'
28257 3' -47.8 NC_005902.1 + 58325 0.69 0.995992
Target:  5'- uACagUUUAACUCCcaagGCGUUAUCAAUa -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 160949 0.84 0.481125
Target:  5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 107241 0.79 0.705084
Target:  5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 75832 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 86339 0.82 0.586012
Target:  5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 111169 0.83 0.501463
Target:  5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 28081 0.72 0.971035
Target:  5'- aACCCUUUAAUUCCuaaaGUaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5043 0.86 0.395131
Target:  5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 116843 0.67 0.999082
Target:  5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 110135 0.72 0.973957
Target:  5'- uACUCUUUAAUUCCAUGUuaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 140991 0.72 0.973957
Target:  5'- cACCCUUUAACUCCAcaCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137832 0.88 0.304489
Target:  5'- aAUCCUUUAGCUCCuaagGCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 152759 0.72 0.971035
Target:  5'- aAUCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 131006 0.92 0.192011
Target:  5'- uACCCUUUAAUUCCAUGCuGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.