miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 68236 0.71 0.98353
Target:  5'- aACCCUUUAACUCU--GCaUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 136636 0.77 0.833651
Target:  5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 85120 0.93 0.154882
Target:  5'- uACCCUUauuaAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAa---UUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67190 0.71 0.976659
Target:  5'- uACCCUUUAACUCCuaa-GgCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgCaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 37317 0.95 0.131435
Target:  5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 167374 0.67 0.999256
Target:  5'- uACCCUUUAACUCUacacuguugccaGUGaCGUagCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGG------------UAC-GCA--GUAGUua -5'
28257 3' -47.8 NC_005902.1 + 130809 0.87 0.327534
Target:  5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 167094 0.67 0.998874
Target:  5'- -aCCUUUAAC-CCAaaUGUGUCAUUGAc -3'
miRNA:   3'- ugGGAAAUUGaGGU--ACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 166073 0.68 0.997599
Target:  5'- aACCCUUUAACUUCuaaGaUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 63429 0.69 0.995992
Target:  5'- uACCUUUUAACUuuauguugcuaUCAaugcuuUGCGUCGUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGA-----------GGU------ACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 11126 0.69 0.995065
Target:  5'- aACCCUUUAAaUCCAuguuguugaugcuuUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUgAGGU--------------ACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 106072 0.7 0.991441
Target:  5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104233 0.7 0.990167
Target:  5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 48163 0.72 0.967886
Target:  5'- aACCCUUUAACUCCuaaaGUaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67778 0.73 0.948477
Target:  5'- uAUCCUUUAACUCUAcacUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 58600 0.74 0.916544
Target:  5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 136728 0.75 0.903747
Target:  5'- uAUUCUUUAACUCCAUGuUGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 165878 0.77 0.806283
Target:  5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.