Results 41 - 60 of 129 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 114319 | 0.76 | 0.875016 |
Target: 5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 89960 | 0.75 | 0.882581 |
Target: 5'- aACCCUUUAACUCCuaagGCaUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 63166 | 0.75 | 0.889894 |
Target: 5'- aACCCUUUAAUUCCuaagGCaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 136728 | 0.75 | 0.903747 |
Target: 5'- uAUUCUUUAACUCCAUGuUGUCAUUGAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 184443 | 0.75 | 0.903747 |
Target: 5'- aACCCUUUAACUCUuaagGUGUUGUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 82184 | 0.75 | 0.910279 |
Target: 5'- uAUCCUUUAACUCCAUauUGUUAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 46188 | 0.75 | 0.910279 |
Target: 5'- aACCCc-UAACUCaugGCGUCAUCAAUg -3' miRNA: 3'- -UGGGaaAUUGAGguaCGCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 127844 | 0.74 | 0.916544 |
Target: 5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 58600 | 0.74 | 0.916544 |
Target: 5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 76022 | 0.74 | 0.916544 |
Target: 5'- aACCCUUUAACUCCuaagGUaUUAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 139814 | 0.74 | 0.92254 |
Target: 5'- uACCUUUUAACUCCAUGU--UGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcaGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 16112 | 0.73 | 0.943825 |
Target: 5'- aACCCUUUAACcCCAaacaCGUCGUCGGUg -3' miRNA: 3'- -UGGGAAAUUGaGGUac--GCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 67778 | 0.73 | 0.948477 |
Target: 5'- uAUCCUUUAACUCUAcacUGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 174663 | 0.73 | 0.948477 |
Target: 5'- uACCCUUUAAUUCCAUauUGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 25068 | 0.73 | 0.948477 |
Target: 5'- cCCCUUUAACUCCuaaaGCGUUGUUGAc -3' miRNA: 3'- uGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 67423 | 0.73 | 0.952866 |
Target: 5'- uAUCCUUUAACUCUAUacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 5245 | 0.73 | 0.952866 |
Target: 5'- uUgCUUUAacaACUUCAUGUGUCAUCAAUg -3' miRNA: 3'- uGgGAAAU---UGAGGUACGCAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 48072 | 0.73 | 0.956996 |
Target: 5'- aACCCUUUAAUUCCuaagGCaUCAUUAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 29537 | 0.73 | 0.956996 |
Target: 5'- aAUCCUUUAACUCUuaagGCaUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
|||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 110248 | 0.73 | 0.956996 |
Target: 5'- uACCCUUUAAUUCCAcaUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUacGCAGUAGUUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home