miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 20182 0.69 0.994497
Target:  5'- cACCCUUUAACUgCAcauUGUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 69241 0.7 0.992581
Target:  5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 142100 0.7 0.992581
Target:  5'- aACCCUUUAAUcCCAcauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24227 0.7 0.991441
Target:  5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 106072 0.7 0.991441
Target:  5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104233 0.7 0.990167
Target:  5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 180750 0.7 0.990167
Target:  5'- aACCCcUUAAUUCCuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGaAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 33153 0.7 0.990167
Target:  5'- aGCaCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UG-GGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 36164 0.7 0.988748
Target:  5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 103831 0.7 0.988748
Target:  5'- aACCCUUUAACUUUcaaaGUGUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48403 0.7 0.988748
Target:  5'- aACCCUUUAACUCCuaaaGUaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 146848 0.7 0.987176
Target:  5'- aACCUUUUAACUCCAuauugaugaUGCuuuGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGU---------ACG---CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 98703 0.7 0.987176
Target:  5'- -gCCUUUAACUCUuaagGUGUCAUUAAc -3'
miRNA:   3'- ugGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 102204 0.7 0.987176
Target:  5'- aACCCUUUAACUCCuaaGauaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-Cgc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 68236 0.71 0.98353
Target:  5'- aACCCUUUAACUCU--GCaUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 131129 0.71 0.98353
Target:  5'- aACCCUUUAAUUCCGcauUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 79927 0.71 0.979149
Target:  5'- aACUCUUUAACUCCuaagGCaUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 173196 0.71 0.978909
Target:  5'- uAUCCUUUAACUCCAcaUcaucaaugacaaaGCGUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGU--A-------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67190 0.71 0.976659
Target:  5'- uACCCUUUAACUCCuaa-GgCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgCaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 140991 0.72 0.973957
Target:  5'- cACCCUUUAACUCCAcaCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.