Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 63216 | 0.69 | 0.994497 |
Target: 5'- cAUCCUUUAAUUCUAUauUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 103831 | 0.7 | 0.988748 |
Target: 5'- aACCCUUUAACUUUcaaaGUGUCAUUGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 33153 | 0.7 | 0.990167 |
Target: 5'- aGCaCCUUUAACUCUAUauUGUCAUCGAc -3' miRNA: 3'- -UG-GGAAAUUGAGGUAc-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 180750 | 0.7 | 0.990167 |
Target: 5'- aACCCcUUAAUUCCuaagGUGUUAUCAAc -3' miRNA: 3'- -UGGGaAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 104233 | 0.7 | 0.990167 |
Target: 5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 98703 | 0.7 | 0.987176 |
Target: 5'- -gCCUUUAACUCUuaagGUGUCAUUAAc -3' miRNA: 3'- ugGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 146848 | 0.7 | 0.987176 |
Target: 5'- aACCUUUUAACUCCAuauugaugaUGCuuuGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGU---------ACG---CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 102204 | 0.7 | 0.987176 |
Target: 5'- aACCCUUUAACUCCuaaGauaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua-Cgc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 48403 | 0.7 | 0.988748 |
Target: 5'- aACCCUUUAACUCCuaaaGUaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 24227 | 0.7 | 0.991441 |
Target: 5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 36164 | 0.7 | 0.988748 |
Target: 5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 69241 | 0.7 | 0.992581 |
Target: 5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 142100 | 0.7 | 0.992581 |
Target: 5'- aACCCUUUAAUcCCAcauUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGaGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 106072 | 0.7 | 0.991441 |
Target: 5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67190 | 0.71 | 0.976659 |
Target: 5'- uACCCUUUAACUCCuaa-GgCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGuacgCaGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 79927 | 0.71 | 0.979149 |
Target: 5'- aACUCUUUAACUCCuaagGCaUCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 173196 | 0.71 | 0.978909 |
Target: 5'- uAUCCUUUAACUCCAcaUcaucaaugacaaaGCGUCAUUGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGU--A-------------CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 68236 | 0.71 | 0.98353 |
Target: 5'- aACCCUUUAACUCU--GCaUCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGuaCGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 131129 | 0.71 | 0.98353 |
Target: 5'- aACCCUUUAAUUCCGcauUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 28081 | 0.72 | 0.971035 |
Target: 5'- aACCCUUUAAUUCCuaaaGUaUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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