Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 54990 | 0.67 | 0.998874 |
Target: 5'- aACCCUUUAACcCCuaagGCaUCAUUAAUa -3' miRNA: 3'- -UGGGAAAUUGaGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 58325 | 0.69 | 0.995992 |
Target: 5'- uACagUUUAACUCCcaagGCGUUAUCAAUa -3' miRNA: 3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 58600 | 0.74 | 0.916544 |
Target: 5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 63107 | 0.69 | 0.996604 |
Target: 5'- aACCCUUUAACUUUuaagGCaUCAUCAu- -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUua -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 63166 | 0.75 | 0.889894 |
Target: 5'- aACCCUUUAAUUCCuaagGCaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 63216 | 0.69 | 0.994497 |
Target: 5'- cAUCCUUUAAUUCUAUauUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 63429 | 0.69 | 0.995992 |
Target: 5'- uACCUUUUAACUuuauguugcuaUCAaugcuuUGCGUCGUCGAUg -3' miRNA: 3'- -UGGGAAAUUGA-----------GGU------ACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67062 | 0.73 | 0.960873 |
Target: 5'- uACCCUUUAACUCCAcauuaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUacgc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67190 | 0.71 | 0.976659 |
Target: 5'- uACCCUUUAACUCCuaa-GgCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGuacgCaGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67423 | 0.73 | 0.952866 |
Target: 5'- uAUCCUUUAACUCUAUacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67778 | 0.73 | 0.948477 |
Target: 5'- uAUCCUUUAACUCUAcacUGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67820 | 0.67 | 0.998628 |
Target: 5'- aACCUUUUAACUCCuaaaGCaUUGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67979 | 0.66 | 0.99952 |
Target: 5'- aAUCCUUUAAUUCCuaaaGUaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 68236 | 0.71 | 0.98353 |
Target: 5'- aACCCUUUAACUCU--GCaUCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGuaCGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 69241 | 0.7 | 0.992581 |
Target: 5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 71258 | 0.72 | 0.971035 |
Target: 5'- uACCCUUUAACUCUAcauCGUCAcCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUaGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 72467 | 0.67 | 0.999256 |
Target: 5'- uAUCCUUUGAUUCCAUGuUGUUAaUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUaGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 73719 | 0.67 | 0.998628 |
Target: 5'- uACCCUUUAACUCUAcacUGUUAUUGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 75832 | 0.8 | 0.672863 |
Target: 5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 76022 | 0.74 | 0.916544 |
Target: 5'- aACCCUUUAACUCCuaagGUaUUAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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