miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 28081 0.72 0.971035
Target:  5'- aACCCUUUAAUUCCuaaaGUaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29523 0.83 0.532647
Target:  5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29537 0.73 0.956996
Target:  5'- aAUCCUUUAACUCUuaagGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 31155 0.66 0.999816
Target:  5'- uACCCUUUAACUCCucuacAUGCugacaacaCAUUAGUg -3'
miRNA:   3'- -UGGGAAAUUGAGG-----UACGca------GUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 31346 0.68 0.997599
Target:  5'- -gCCUUUAACUCCAaaCaUCAUCAAUa -3'
miRNA:   3'- ugGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 33153 0.7 0.990167
Target:  5'- aGCaCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UG-GGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 36022 0.78 0.7842
Target:  5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3'
miRNA:   3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 36164 0.7 0.988748
Target:  5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 37317 0.95 0.131435
Target:  5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 39347 0.79 0.736677
Target:  5'- aACCCUUUAACUCUAcauUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 40733 0.76 0.859158
Target:  5'- uACCCuUUUAACUCCAUGCuaUUGUCAAUg -3'
miRNA:   3'- -UGGG-AAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 42296 0.87 0.351845
Target:  5'- uACCUUUUAAUUCUAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 46188 0.75 0.910279
Target:  5'- aACCCc-UAACUCaugGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGaaAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48072 0.73 0.956996
Target:  5'- aACCCUUUAAUUCCuaagGCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48163 0.72 0.967886
Target:  5'- aACCCUUUAACUCCuaaaGUaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48318 0.67 0.999082
Target:  5'- uACCCUUUAAUUCCuuuaugCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgcaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48403 0.7 0.988748
Target:  5'- aACCCUUUAACUCCuaaaGUaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 50527 0.67 0.999256
Target:  5'- uACCCUUUAACucuUCCAUGCa-CAgCAAUa -3'
miRNA:   3'- -UGGGAAAUUG---AGGUACGcaGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 52840 0.72 0.967886
Target:  5'- uAUCCUUUAACUCCAUacCGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.