miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 154654 0.66 0.999816
Target:  5'- uACCCUUUAACUUUuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 152759 0.72 0.971035
Target:  5'- aAUCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 146848 0.7 0.987176
Target:  5'- aACCUUUUAACUCCAuauugaugaUGCuuuGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGU---------ACG---CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 142100 0.7 0.992581
Target:  5'- aACCCUUUAAUcCCAcauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 140991 0.72 0.973957
Target:  5'- cACCCUUUAACUCCAcaCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 139814 0.74 0.92254
Target:  5'- uACCUUUUAACUCCAUGU--UGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137832 0.88 0.304489
Target:  5'- aAUCCUUUAGCUCCuaagGCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137556 0.67 0.999082
Target:  5'- aACUUaUUAACUCCAcGCuGUUAUCAAUa -3'
miRNA:   3'- -UGGGaAAUUGAGGUaCG-CAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137492 0.68 0.998337
Target:  5'- uACUCUUUAACUCUAUaCaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 136728 0.75 0.903747
Target:  5'- uAUUCUUUAACUCCAUGuUGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 136636 0.77 0.833651
Target:  5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 134640 0.76 0.842372
Target:  5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 131129 0.71 0.98353
Target:  5'- aACCCUUUAAUUCCGcauUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 131006 0.92 0.192011
Target:  5'- uACCCUUUAAUUCCAUGCuGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 130809 0.87 0.327534
Target:  5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127844 0.74 0.916544
Target:  5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127676 1.07 0.025025
Target:  5'- aACCCUUUAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127399 0.66 0.999699
Target:  5'- aACUCUUUAACUCUuaaGaCGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 118574 0.67 0.998628
Target:  5'- aACCCUUUAACUUCuaagGCaUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 116843 0.67 0.999082
Target:  5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.