miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 184443 0.75 0.903747
Target:  5'- aACCCUUUAACUCUuaagGUGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 180956 0.79 0.705084
Target:  5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 180750 0.7 0.990167
Target:  5'- aACCCcUUAAUUCCuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGaAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 175937 0.77 0.824723
Target:  5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 175020 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 174663 0.73 0.948477
Target:  5'- uACCCUUUAAUUCCAUauUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 174577 0.77 0.806283
Target:  5'- uACCuUUUUAACUCCAgGCGUUAUCAAc -3'
miRNA:   3'- -UGG-GAAAUUGAGGUaCGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 173196 0.71 0.978909
Target:  5'- uAUCCUUUAACUCCAcaUcaucaaugacaaaGCGUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGU--A-------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 170069 0.67 0.998628
Target:  5'- uAUCCUUUAACUCCA--CaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 169665 0.79 0.747018
Target:  5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 169194 0.78 0.787129
Target:  5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 167374 0.67 0.999256
Target:  5'- uACCCUUUAACUCUacacuguugccaGUGaCGUagCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGG------------UAC-GCA--GUAGUua -5'
28257 3' -47.8 NC_005902.1 + 167094 0.67 0.998874
Target:  5'- -aCCUUUAAC-CCAaaUGUGUCAUUGAc -3'
miRNA:   3'- ugGGAAAUUGaGGU--ACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 166073 0.68 0.997599
Target:  5'- aACCCUUUAACUUCuaaGaUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 165878 0.77 0.806283
Target:  5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 161772 0.66 0.99952
Target:  5'- aAUCCUUUAACaCCuaagGUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGaGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 160949 0.84 0.481125
Target:  5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 160818 0.77 0.833651
Target:  5'- uACCUUUUAACUCaagGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 157916 1.02 0.04881
Target:  5'- uACCCUUUAACUCCAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 156461 0.72 0.971035
Target:  5'- uAUCCUUUAAUUUCAUGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.