miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 157916 1.02 0.04881
Target:  5'- uACCCUUUAACUCCAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 136636 0.77 0.833651
Target:  5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 136728 0.75 0.903747
Target:  5'- uAUUCUUUAACUCCAUGuUGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 78150 0.66 0.999816
Target:  5'- cAUCCUUUAACUUUAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 130809 0.87 0.327534
Target:  5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 42296 0.87 0.351845
Target:  5'- uACCUUUUAAUUCUAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 175020 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 81854 0.77 0.833651
Target:  5'- aACUCUUUAACUCCuaagGCGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90488 0.78 0.79679
Target:  5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 169665 0.79 0.747018
Target:  5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 37317 0.95 0.131435
Target:  5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 165878 0.77 0.806283
Target:  5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 85120 0.93 0.154882
Target:  5'- uACCCUUauuaAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAa---UUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 180956 0.79 0.705084
Target:  5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 175937 0.77 0.824723
Target:  5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 40733 0.76 0.859158
Target:  5'- uACCCuUUUAACUCCAUGCuaUUGUCAAUg -3'
miRNA:   3'- -UGGG-AAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 10458 0.88 0.31203
Target:  5'- uACUCUUUAGCUCCAUGCaUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29523 0.83 0.532647
Target:  5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.