miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 127676 1.07 0.025025
Target:  5'- aACCCUUUAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 157916 1.02 0.04881
Target:  5'- uACCCUUUAACUCCAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 37317 0.95 0.131435
Target:  5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 85120 0.93 0.154882
Target:  5'- uACCCUUauuaAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAa---UUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 131006 0.92 0.192011
Target:  5'- uACCCUUUAAUUCCAUGCuGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 137832 0.88 0.304489
Target:  5'- aAUCCUUUAGCUCCuaagGCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 10458 0.88 0.31203
Target:  5'- uACUCUUUAGCUCCAUGCaUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 130809 0.87 0.327534
Target:  5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 42296 0.87 0.351845
Target:  5'- uACCUUUUAAUUCUAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 95528 0.86 0.36875
Target:  5'- uACCCUUUAACUCCAcauCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5043 0.86 0.395131
Target:  5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 160949 0.84 0.481125
Target:  5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 111169 0.83 0.501463
Target:  5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29523 0.83 0.532647
Target:  5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 86339 0.82 0.586012
Target:  5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 175020 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 75832 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 180956 0.79 0.705084
Target:  5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 107241 0.79 0.705084
Target:  5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.