miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 39347 0.79 0.736677
Target:  5'- aACCCUUUAACUCUAcauUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90125 0.79 0.747018
Target:  5'- uACCCUUUAAUUCUAUauCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 169665 0.79 0.747018
Target:  5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 104142 0.78 0.767345
Target:  5'- cACCUUUUAACUCCAUGuUGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 36022 0.78 0.7842
Target:  5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3'
miRNA:   3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 169194 0.78 0.787129
Target:  5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90488 0.78 0.79679
Target:  5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 23356 0.78 0.79679
Target:  5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 174577 0.77 0.806283
Target:  5'- uACCuUUUUAACUCCAgGCGUUAUCAAc -3'
miRNA:   3'- -UGG-GAAAUUGAGGUaCGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 165878 0.77 0.806283
Target:  5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 175937 0.77 0.824723
Target:  5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 81854 0.77 0.833651
Target:  5'- aACUCUUUAACUCCuaagGCGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 10059 0.77 0.833651
Target:  5'- aACCCUUUAACUCUgcGCuGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGuaCG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 136636 0.77 0.833651
Target:  5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 160818 0.77 0.833651
Target:  5'- uACCUUUUAACUCaagGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 134640 0.76 0.842372
Target:  5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 94950 0.76 0.859158
Target:  5'- uACCCUUUAACUCCAcaCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 40733 0.76 0.859158
Target:  5'- uACCCuUUUAACUCCAUGCuaUUGUCAAUg -3'
miRNA:   3'- -UGGG-AAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 4897 0.76 0.862405
Target:  5'- aACCCUUUAACUCUcaaagcauuacagugAUauaaaGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGG---------------UA-----CGCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.