miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 54990 0.67 0.998874
Target:  5'- aACCCUUUAACcCCuaagGCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGaGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 73719 0.67 0.998628
Target:  5'- uACCCUUUAACUCUAcacUGUUAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 118574 0.67 0.998628
Target:  5'- aACCCUUUAACUUCuaagGCaUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 170069 0.67 0.998628
Target:  5'- uAUCCUUUAACUCCA--CaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 67820 0.67 0.998628
Target:  5'- aACCUUUUAACUCCuaaaGCaUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137492 0.68 0.998337
Target:  5'- uACUCUUUAACUCUAUaCaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 31346 0.68 0.997599
Target:  5'- -gCCUUUAACUCCAaaCaUCAUCAAUa -3'
miRNA:   3'- ugGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 95871 0.68 0.997599
Target:  5'- aACCCUcUAACUCCuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAaAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 166073 0.68 0.997599
Target:  5'- aACCCUUUAACUUCuaaGaUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 110167 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaagGCaUUGUCAGa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 63107 0.69 0.996604
Target:  5'- aACCCUUUAACUUUuaagGCaUCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUua -5'
28257 3' -47.8 NC_005902.1 + 25118 0.69 0.996604
Target:  5'- uACCCUUUAACUCUAUGCu-------- -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcaguaguua -5'
28257 3' -47.8 NC_005902.1 + 63429 0.69 0.995992
Target:  5'- uACCUUUUAACUuuauguugcuaUCAaugcuuUGCGUCGUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGA-----------GGU------ACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 58325 0.69 0.995992
Target:  5'- uACagUUUAACUCCcaagGCGUUAUCAAUa -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 1554 0.69 0.995293
Target:  5'- uACCCUUUAACUUCAcauCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 81926 0.69 0.995293
Target:  5'- uACCCUUUAACUCCGcaaCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 11126 0.69 0.995065
Target:  5'- aACCCUUUAAaUCCAuguuguugaugcuuUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUgAGGU--------------ACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63216 0.69 0.994497
Target:  5'- cAUCCUUUAAUUCUAUauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.