miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 137997 0.66 0.999999
Target:  5'- ---cUGAcGAUGCCUUaGGAGUUAu- -3'
miRNA:   3'- aauaACUaUUGCGGAAcCCUCAAUuu -5'
28257 5' -44.3 NC_005902.1 + 159609 0.66 0.999999
Target:  5'- -cAUUGAUAAUGCCUUagaaauuaaaGGGuuaaauGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAA----------CCCu-----CAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 107462 0.68 0.99997
Target:  5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 31381 0.68 0.999945
Target:  5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 85809 0.69 0.999926
Target:  5'- -cAUUGuaAUAAUGCUUUGGG-GUUAAAg -3'
miRNA:   3'- aaUAAC--UAUUGCGGAACCCuCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 136053 0.87 0.55607
Target:  5'- aUUAUUGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 90163 0.86 0.567188
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAGAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159717 0.81 0.817111
Target:  5'- -cAUUGAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAACUAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 71302 0.8 0.853579
Target:  5'- -----aAUGAUGCCUUGGGAGUUAGGg -3'
miRNA:   3'- aauaacUAUUGCGGAACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 158312 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 10097 0.73 0.993159
Target:  5'- aUUGUUGAUGAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 16371 0.78 0.926692
Target:  5'- -cAUUGAUGACGCCUUaaGAGUUAAAa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 51763 0.72 0.996437
Target:  5'- aUUGUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110287 0.72 0.997934
Target:  5'- -cAUUGAUggUGCUUUaGGAGUUAAGa -3'
miRNA:   3'- aaUAACUAuuGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104186 0.71 0.998863
Target:  5'- -----aAUAACGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118843 0.71 0.99908
Target:  5'- -cAUUGuuauUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACu---AUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 131044 0.7 0.99941
Target:  5'- gUUAUUaAUGAUGCCUUaGGGGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 107307 0.66 0.999999
Target:  5'- -cGUUGucAACGCUUUaGGAGUUAAGg -3'
miRNA:   3'- aaUAACuaUUGCGGAAcCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.