miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 174701 0.69 0.999869
Target:  5'- gUUAUUGAUGAUGUCUUaaGAGUUAAu -3'
miRNA:   3'- -AAUAACUAUUGCGGAAccCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 106109 0.69 0.999829
Target:  5'- -cAUUaAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 25220 0.67 0.999996
Target:  5'- -cAUUGAcAACGCCUU--GAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 83831 0.68 0.999979
Target:  5'- aUGUUGAUGAUaUCUUaGGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104301 0.69 0.999829
Target:  5'- -cAUUGAUGACGgUgugaggugGGGGGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCgGaa------CCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 20197 0.66 0.999999
Target:  5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 48207 0.71 0.99908
Target:  5'- ----cGAUGACGCCUUaGGAGcUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCaAUUU- -5'
28257 5' -44.3 NC_005902.1 + 180993 0.72 0.997934
Target:  5'- -cAUUGAcAACGCUUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 167524 0.69 0.999869
Target:  5'- -cAUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 172697 0.69 0.999829
Target:  5'- gUGUUGucaAUGAUGCCUUaGGGGUUAAc -3'
miRNA:   3'- aAUAAC---UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 107462 0.68 0.99997
Target:  5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 85809 0.69 0.999926
Target:  5'- -cAUUGuaAUAAUGCUUUGGG-GUUAAAg -3'
miRNA:   3'- aaUAAC--UAUUGCGGAACCCuCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 31381 0.68 0.999945
Target:  5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 71302 0.8 0.853579
Target:  5'- -----aAUGAUGCCUUGGGAGUUAGGg -3'
miRNA:   3'- aauaacUAUUGCGGAACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159836 0.67 0.999996
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159717 0.81 0.817111
Target:  5'- -cAUUGAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAACUAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 90163 0.86 0.567188
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAGAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 136053 0.87 0.55607
Target:  5'- aUUAUUGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 94974 0.66 0.999998
Target:  5'- -----aAUAAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 127710 1.04 0.0711
Target:  5'- gUUAUUGAUAACGCCUUGGGAGUUAAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAACCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.