miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 85809 0.69 0.999926
Target:  5'- -cAUUGuaAUAAUGCUUUGGG-GUUAAAg -3'
miRNA:   3'- aaUAAC--UAUUGCGGAACCCuCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 90163 0.86 0.567188
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAGAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 91086 0.67 0.999985
Target:  5'- aUUAUUGAUGAUGUgU--GGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGgAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 94459 0.67 0.999992
Target:  5'- gUUAUaGAcAAUGCCUUaGGAGUUAAGa -3'
miRNA:   3'- -AAUAaCUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 94974 0.66 0.999998
Target:  5'- -----aAUAAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 95552 0.67 0.999992
Target:  5'- ----cGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 96074 0.86 0.578362
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 99696 0.77 0.94793
Target:  5'- aUUGUUGAUGACGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 100913 0.67 0.999985
Target:  5'- aUUAUUGAUGACGCau--GGAGUUu-- -3'
miRNA:   3'- -AAUAACUAUUGCGgaacCCUCAAuuu -5'
28257 5' -44.3 NC_005902.1 + 104186 0.71 0.998863
Target:  5'- -----aAUAACGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104301 0.69 0.999829
Target:  5'- -cAUUGAUGACGgUgugaggugGGGGGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCgGaa------CCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 106109 0.69 0.999829
Target:  5'- -cAUUaAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 107307 0.66 0.999999
Target:  5'- -cGUUGucAACGCUUUaGGAGUUAAGg -3'
miRNA:   3'- aaUAACuaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 107462 0.68 0.99997
Target:  5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110012 0.73 0.994145
Target:  5'- aUUAUUGAUAAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110287 0.72 0.997934
Target:  5'- -cAUUGAUggUGCUUUaGGAGUUAAGa -3'
miRNA:   3'- aaUAACUAuuGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118217 0.68 0.999979
Target:  5'- -cAUUGAcAAUGCUUUaGGAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118843 0.71 0.99908
Target:  5'- -cAUUGuuauUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACu---AUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 122868 0.73 0.994145
Target:  5'- aUUGUUGAUGAUGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 127710 1.04 0.0711
Target:  5'- gUUAUUGAUAACGCCUUGGGAGUUAAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAACCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.