miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 96074 0.86 0.578362
Target:  5'- gUUGUUGAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 172697 0.69 0.999829
Target:  5'- gUGUUGucaAUGAUGCCUUaGGGGUUAAc -3'
miRNA:   3'- aAUAAC---UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 174701 0.69 0.999869
Target:  5'- gUUAUUGAUGAUGUCUUaaGAGUUAAu -3'
miRNA:   3'- -AAUAACUAUUGCGGAAccCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 20197 0.66 0.999999
Target:  5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 27640 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 37360 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAa -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 61554 0.74 0.989384
Target:  5'- -cGUUGAcAAUGCCUuaggagUGGGGGUUAAGu -3'
miRNA:   3'- aaUAACUaUUGCGGA------ACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 156500 0.74 0.989384
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 122868 0.73 0.994145
Target:  5'- aUUGUUGAUGAUGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 106109 0.69 0.999829
Target:  5'- -cAUUaAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 180993 0.72 0.997934
Target:  5'- -cAUUGAcAACGCUUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110012 0.73 0.994145
Target:  5'- aUUAUUGAUAAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11459 0.85 0.657354
Target:  5'- aUUGUUGAUAACGCCU--GGAGUUAAAa -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 48207 0.71 0.99908
Target:  5'- ----cGAUGACGCCUUaGGAGcUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCaAUUU- -5'
28257 5' -44.3 NC_005902.1 + 143745 0.77 0.94793
Target:  5'- -cAUUGAUAAUGCCUUGaguuaaGGGGUUAAGu -3'
miRNA:   3'- aaUAACUAUUGCGGAAC------CCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11214 0.73 0.993159
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAGg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104301 0.69 0.999829
Target:  5'- -cAUUGAUGACGgUgugaggugGGGGGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCgGaa------CCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 167524 0.69 0.999869
Target:  5'- -cAUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 99696 0.77 0.94793
Target:  5'- aUUGUUGAUGACGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 58362 0.75 0.979708
Target:  5'- gUAUUGAUGACGCau--GGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGCGgaacCCUCAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.