Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 10097 | 0.73 | 0.993159 |
Target: 5'- aUUGUUGAUGAUaCCUUaGGAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 107462 | 0.68 | 0.99997 |
Target: 5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3' miRNA: 3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 31381 | 0.68 | 0.999945 |
Target: 5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 85809 | 0.69 | 0.999926 |
Target: 5'- -cAUUGuaAUAAUGCUUUGGG-GUUAAAg -3' miRNA: 3'- aaUAAC--UAUUGCGGAACCCuCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 131044 | 0.7 | 0.99941 |
Target: 5'- gUUAUUaAUGAUGCCUUaGGGGUUAAAg -3' miRNA: 3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 118843 | 0.71 | 0.99908 |
Target: 5'- -cAUUGuuauUGAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- aaUAACu---AUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 104186 | 0.71 | 0.998863 |
Target: 5'- -----aAUAACGCCUUaGGAGUUAAAg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 110287 | 0.72 | 0.997934 |
Target: 5'- -cAUUGAUggUGCUUUaGGAGUUAAGa -3' miRNA: 3'- aaUAACUAuuGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 51763 | 0.72 | 0.996437 |
Target: 5'- aUUGUUaAUAAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 100913 | 0.67 | 0.999985 |
Target: 5'- aUUAUUGAUGACGCau--GGAGUUu-- -3' miRNA: 3'- -AAUAACUAUUGCGgaacCCUCAAuuu -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 118217 | 0.68 | 0.999979 |
Target: 5'- -cAUUGAcAAUGCUUUaGGAGUUAAAa -3' miRNA: 3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 169238 | 0.67 | 0.999989 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 159609 | 0.66 | 0.999999 |
Target: 5'- -cAUUGAUAAUGCCUUagaaauuaaaGGGuuaaauGUUAAGa -3' miRNA: 3'- aaUAACUAUUGCGGAA----------CCCu-----CAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 137997 | 0.66 | 0.999999 |
Target: 5'- ---cUGAcGAUGCCUUaGGAGUUAu- -3' miRNA: 3'- aauaACUaUUGCGGAAcCCUCAAUuu -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 55225 | 0.66 | 0.999999 |
Target: 5'- gUUAUcGAUGACGCCUUaGaAGUUAAAg -3' miRNA: 3'- -AAUAaCUAUUGCGGAAcCcUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 18829 | 0.66 | 0.999998 |
Target: 5'- aUGUUGuaaacAAUGCCUUaGGAGUUAAc -3' miRNA: 3'- aAUAACua---UUGCGGAAcCCUCAAUUu -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 94974 | 0.66 | 0.999998 |
Target: 5'- -----aAUAAUGCCUUaGGAGUUAAGg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 159836 | 0.67 | 0.999996 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAGg -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 174976 | 0.67 | 0.999995 |
Target: 5'- -----aAUGAUGCCUUaGGAGUUAAAu -3' miRNA: 3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5' |
|||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 95552 | 0.67 | 0.999992 |
Target: 5'- ----cGAUGAUGCCUUaaGAGUUAAAg -3' miRNA: 3'- aauaaCUAUUGCGGAAccCUCAAUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home