miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 94974 0.66 0.999998
Target:  5'- -----aAUAAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 159836 0.67 0.999996
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAGg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 174976 0.67 0.999995
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAu -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 95552 0.67 0.999992
Target:  5'- ----cGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 169238 0.67 0.999989
Target:  5'- -----aAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118217 0.68 0.999979
Target:  5'- -cAUUGAcAAUGCUUUaGGAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 100913 0.67 0.999985
Target:  5'- aUUAUUGAUGACGCau--GGAGUUu-- -3'
miRNA:   3'- -AAUAACUAUUGCGgaacCCUCAAuuu -5'
28257 5' -44.3 NC_005902.1 + 107462 0.68 0.99997
Target:  5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 61554 0.74 0.989384
Target:  5'- -cGUUGAcAAUGCCUuaggagUGGGGGUUAAGu -3'
miRNA:   3'- aaUAACUaUUGCGGA------ACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 156500 0.74 0.989384
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11214 0.73 0.993159
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAGg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110012 0.73 0.994145
Target:  5'- aUUAUUGAUAAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 122868 0.73 0.994145
Target:  5'- aUUGUUGAUGAUGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 58362 0.75 0.979708
Target:  5'- gUAUUGAUGACGCau--GGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGCGgaacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 37360 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAa -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 27640 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 99696 0.77 0.94793
Target:  5'- aUUGUUGAUGACGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 143745 0.77 0.94793
Target:  5'- -cAUUGAUAAUGCCUUGaguuaaGGGGUUAAGu -3'
miRNA:   3'- aaUAACUAUUGCGGAAC------CCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11459 0.85 0.657354
Target:  5'- aUUGUUGAUAACGCCU--GGAGUUAAAa -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 20197 0.66 0.999999
Target:  5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.