miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 54343 0.78 0.882769
Target:  5'- aUUAACACCUaAGCUAuauaUAUGCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAU----AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 69071 0.72 0.992327
Target:  5'- gUUAACACCUaAGCUuaAUAUGCUUGUu -3'
miRNA:   3'- aAAUUGUGGAcUCGA--UAUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 69374 0.69 0.999275
Target:  5'- gUUUAACACCUaaaCUAUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcucGAUAUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 71606 0.72 0.992327
Target:  5'- cUUUAACACCUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 85057 0.7 0.998639
Target:  5'- uUUUAACAUCUaGGCUAUAuacuuacaUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU--------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 86026 0.72 0.993296
Target:  5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 88298 0.75 0.966011
Target:  5'- aUUAACACCUaAGCUAUAUGCa---- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUACGaguac -5'
28258 3' -45.6 NC_005902.1 + 99559 0.73 0.980488
Target:  5'- cUUUAACACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 99623 0.67 0.999944
Target:  5'- aUUAACAUUUaAGCUGUAuaUGCUCAc- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAU--ACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 100106 0.72 0.993296
Target:  5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 105267 0.66 0.999989
Target:  5'- cUUUAACACCUaAGCUAUAUacccaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 109919 0.66 0.999989
Target:  5'- cUUUAAgACCUaAGCUAUAUGCaaaCAUa -3'
miRNA:   3'- -AAAUUgUGGAcUCGAUAUACGa--GUAc -5'
28258 3' -45.6 NC_005902.1 + 111232 0.67 0.999869
Target:  5'- uUUUAACACCUaAGCUAUAUauacaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUAc -5'
28258 3' -45.6 NC_005902.1 + 112177 0.68 0.999715
Target:  5'- --gAGCACagUGAGUgagUAUAUGCUUAUGu -3'
miRNA:   3'- aaaUUGUGg-ACUCG---AUAUACGAGUAC- -5'
28258 3' -45.6 NC_005902.1 + 116674 0.66 0.999989
Target:  5'- uUUUAACACCUGaAGCUuAUAUaGUUUAg- -3'
miRNA:   3'- -AAAUUGUGGAC-UCGA-UAUA-CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 117732 0.69 0.999539
Target:  5'- cUUUAACAUCUaAGCUAUAUGCa---- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGaguac -5'
28258 3' -45.6 NC_005902.1 + 118296 0.66 0.999978
Target:  5'- uUUUAACACUUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 120248 1.06 0.041613
Target:  5'- cUUUAACACCUGAGCUAUAUGCUCAUGc -3'
miRNA:   3'- -AAAUUGUGGACUCGAUAUACGAGUAC- -5'
28258 3' -45.6 NC_005902.1 + 128775 0.66 0.99997
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 135815 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.