Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28258 | 3' | -45.6 | NC_005902.1 | + | 3077 | 0.72 | 0.993397 |
Target: 5'- aUUUAACACCUaAGCUAUAuauacacuUGUUCAUa -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAU--------ACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 170591 | 0.72 | 0.993397 |
Target: 5'- -gUAACACCUGAcCUAUAuaUGCUUAUu -3' miRNA: 3'- aaAUUGUGGACUcGAUAU--ACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 18859 | 0.72 | 0.993397 |
Target: 5'- uUUUAACACCUaAGCUAUAUacGCUUAa- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUA--CGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 86026 | 0.72 | 0.993296 |
Target: 5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3' miRNA: 3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 100106 | 0.72 | 0.993296 |
Target: 5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3' miRNA: 3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 69071 | 0.72 | 0.992327 |
Target: 5'- gUUAACACCUaAGCUuaAUAUGCUUGUu -3' miRNA: 3'- aAAUUGUGGAcUCGA--UAUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 71606 | 0.72 | 0.992327 |
Target: 5'- cUUUAACACCUaAGCUAUAUaCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 137900 | 0.72 | 0.991122 |
Target: 5'- gUUAACAUCUaAGCUAUauauGUGCUCAUu -3' miRNA: 3'- aAAUUGUGGAcUCGAUA----UACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 41984 | 0.72 | 0.991122 |
Target: 5'- gUUUAACACCUaAGCUAUAUaCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 46938 | 0.73 | 0.98827 |
Target: 5'- gUUAAUACCUaAGCUAUAUGCaagCAUa -3' miRNA: 3'- aAAUUGUGGAcUCGAUAUACGa--GUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 145048 | 0.73 | 0.98827 |
Target: 5'- cUUUAGCACCUaAGCUAUAUGUgaGUGu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUACGagUAC- -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 50046 | 0.73 | 0.984754 |
Target: 5'- cUUUAACACCUaAGCUAuguucauuugcUAUGCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAU-----------AUACGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 143776 | 0.73 | 0.980488 |
Target: 5'- cUUUAACACCUaAGCUAUAUaCUCAUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 99559 | 0.73 | 0.980488 |
Target: 5'- cUUUAACACCUaAGCUAUAUaCUCAUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 146429 | 0.74 | 0.978047 |
Target: 5'- cUUUAACACCUaAGCUAuaauucacUAUGCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAU--------AUACGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 88298 | 0.75 | 0.966011 |
Target: 5'- aUUAACACCUaAGCUAUAUGCa---- -3' miRNA: 3'- aAAUUGUGGAcUCGAUAUACGaguac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 143645 | 0.76 | 0.945249 |
Target: 5'- aUUGACACCUaAGCUAUauacuuaacGUGCUCAUu -3' miRNA: 3'- aAAUUGUGGAcUCGAUA---------UACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 16519 | 0.76 | 0.940274 |
Target: 5'- -gUAACACCUGAGaUAUAUaGCUCAg- -3' miRNA: 3'- aaAUUGUGGACUCgAUAUA-CGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 54343 | 0.78 | 0.882769 |
Target: 5'- aUUAACACCUaAGCUAuauaUAUGCUCAUu -3' miRNA: 3'- aAAUUGUGGAcUCGAU----AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 184752 | 0.81 | 0.764008 |
Target: 5'- -cUAACACCUGAGCUAUAUauaCUCAUu -3' miRNA: 3'- aaAUUGUGGACUCGAUAUAc--GAGUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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