miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 167158 0.68 0.999829
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 145948 0.68 0.999829
Target:  5'- cUUUAACAUCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 13185 0.68 0.999825
Target:  5'- cUUUAACACCUaAGCUAUAuacccauuugcgaUGCUUAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU-------------ACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 169126 0.68 0.999825
Target:  5'- cUUUAACACCUaAGCUAuauauuuguuugaUAUGCUUAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 3024 0.68 0.999779
Target:  5'- aUUAACAUCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 34817 0.68 0.999715
Target:  5'- cUUUAACACCUaAGUUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 112177 0.68 0.999715
Target:  5'- --gAGCACagUGAGUgagUAUAUGCUUAUGu -3'
miRNA:   3'- aaaUUGUGg-ACUCG---AUAUACGAGUAC- -5'
28258 3' -45.6 NC_005902.1 + 184592 0.68 0.999708
Target:  5'- cUUUAACACUUaAGCUAUAuacucacuugcuaUGCUCAUc -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU-------------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 11409 0.68 0.999628
Target:  5'- cUUUAACACUUaAGCUAUauacuuguuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 142157 0.69 0.999539
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 117732 0.69 0.999539
Target:  5'- cUUUAACAUCUaAGCUAUAUGCa---- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGaguac -5'
28258 3' -45.6 NC_005902.1 + 51676 0.69 0.999528
Target:  5'- uUUUAACACUUaAGCUAUauacucauuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 69374 0.69 0.999275
Target:  5'- gUUUAACACCUaaaCUAUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcucGAUAUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 149202 0.69 0.99889
Target:  5'- uUUUAAUACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 85057 0.7 0.998639
Target:  5'- uUUUAACAUCUaGGCUAUAuacuuacaUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU--------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 157852 0.7 0.998639
Target:  5'- aUUUAACACCUaAGCUAUAuauuUGCUUg-- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGuac -5'
28258 3' -45.6 NC_005902.1 + 184864 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUGUAuauaUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 135815 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 50213 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 37771 0.71 0.994345
Target:  5'- uUUUAACACCUaAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAu--AUACGAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.