miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 151101 0.7 1
Target:  5'- cCCUUUAAccCCAUAUUGUUgaUGAUGu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGuaACUAC- -5'
28259 3' -41 NC_005902.1 + 131008 0.71 1
Target:  5'- cCCUUUAAUUCCAUGcUGUCAUcaacGAUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAa---CUAc -5'
28259 3' -41 NC_005902.1 + 63168 0.7 1
Target:  5'- cCCUUUAAUUCCuaaggcauCAUCaacaaugcaaaacGUCAUUGAa- -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUAG-------------CAGUAACUac -5'
28259 3' -41 NC_005902.1 + 20126 0.71 1
Target:  5'- cCCUUUAAcUUCACA---UCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUagcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 82186 0.71 0.999999
Target:  5'- uCCUUUAAcUCCAUAUUGUUAUcaaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUA---ACUac -5'
28259 3' -41 NC_005902.1 + 16114 0.71 0.999999
Target:  5'- cCCUUUAAccccaaaCACGUCGUCggUGAUa -3'
miRNA:   3'- -GGAAAUUaag----GUGUAGCAGuaACUAc -5'
28259 3' -41 NC_005902.1 + 152761 0.71 0.999999
Target:  5'- uCCUUUAAcUCUAUAUUGUCAUcGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUac -5'
28259 3' -41 NC_005902.1 + 111171 0.71 0.999999
Target:  5'- cCCUUUAAcUCCuaaugCGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 5045 0.72 0.999998
Target:  5'- cCCUUUAAcUCCuaaaGCGUUGUCAaUGAUa -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 20184 0.72 0.999998
Target:  5'- cCCUUUAAcUgCACAUUGUUAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAgGUGUAGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 33156 0.72 0.999997
Target:  5'- aCCUUUAAcUCUAUAUUGUCAUcGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUac -5'
28259 3' -41 NC_005902.1 + 163564 0.72 0.999997
Target:  5'- aCCUUUAAcUCaACAUUaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGgUGUAGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 130892 0.72 0.999996
Target:  5'- cCCUUUAAUUCUGCAUUGU---UGAUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAguaACUAc -5'
28259 3' -41 NC_005902.1 + 127846 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 148304 0.73 0.999994
Target:  5'- cCCUUUAAUUCCACAUCuUUAUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUAacuac -5'
28259 3' -41 NC_005902.1 + 157918 0.73 0.999994
Target:  5'- cCCUUUAAcUCCAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 58602 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 1556 0.73 0.999991
Target:  5'- cCCUUUAAcUUCACAUCaUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGcAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 36166 0.73 0.999988
Target:  5'- cUCUUUAAcUCUACAUUGUCAUcaacGAUGu -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 72469 0.73 0.999983
Target:  5'- uCCUUUGAUUCCAUGUUGUUAauaaUGAc- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUa---ACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.