miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 87303 0.66 1
Target:  5'- --gUUAAcUUCAUAUUGUCAcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 88765 0.76 0.999509
Target:  5'- cCCUUUAAUUCUAUAUUGUCAacaauacGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUaa-----CUAC- -5'
28259 3' -41 NC_005902.1 + 90127 0.86 0.902148
Target:  5'- cCCUUUAAUUCUAUAUCGUCAUcaaUGAc- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUA---ACUac -5'
28259 3' -41 NC_005902.1 + 92710 0.66 1
Target:  5'- cCCcUUAAcUUCACAUCGUUGUUaAUGa -3'
miRNA:   3'- -GGaAAUUaAGGUGUAGCAGUAAcUAC- -5'
28259 3' -41 NC_005902.1 + 93488 0.67 1
Target:  5'- aCCUUUAAcUCUACAuuaUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGU---AGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 94765 0.8 0.990732
Target:  5'- cCCUUUAc-UUCACAUUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUuaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 95530 0.96 0.497341
Target:  5'- cCCUUUAAcUCCACAUCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 99682 0.81 0.986055
Target:  5'- cUCUUUAAUUCCACAUUGU---UGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAguaACUAC- -5'
28259 3' -41 NC_005902.1 + 103833 0.69 1
Target:  5'- cCCUUUAAcUUUCAaagUGUCAUUGAUa -3'
miRNA:   3'- -GGAAAUU-AAGGUguaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 103935 0.71 1
Target:  5'- cCCUUUAAUUCUuaaaGCA---UCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUagcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 104144 0.81 0.982052
Target:  5'- cCUUUUAAcUCCAUGUUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 106074 0.66 1
Target:  5'- uCCUUUAAcUUCACAcUGUCAUcaacGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 109656 0.73 0.999983
Target:  5'- uCCUUUAAUUCUAUGcUGUUAUUGGUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 110137 0.68 1
Target:  5'- cUCUUUAAUUCCAUGUUauuaUCAaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGc---AGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 110169 0.81 0.988422
Target:  5'- cCCUUUAAUUCCuaagGCAUUGUCAgaauauaaagugucaUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUAGCAGU---------------AACUAC- -5'
28259 3' -41 NC_005902.1 + 110250 0.83 0.96965
Target:  5'- cCCUUUAAUUCCACAUgucauuaacaaugcgUuguGUCAUUGAUGg -3'
miRNA:   3'- -GGAAAUUAAGGUGUA---------------G---CAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 111171 0.71 0.999999
Target:  5'- cCCUUUAAcUCCuaaugCGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 113536 0.74 0.999967
Target:  5'- cCUUUUAAUUCCACAUUaUUAaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 114321 1.15 0.062015
Target:  5'- cCCUUUAAUUCCACAUCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 118244 0.85 0.927579
Target:  5'- --gUUAAUUCUACAUUGUUAUUGAUGa -3'
miRNA:   3'- ggaAAUUAAGGUGUAGCAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.