miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 36274 0.67 1
Target:  5'- cUCUUUAAUUUCACAUUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 37319 0.71 1
Target:  5'- cCCUUUAAcUCCAUGUUGUCAUc---- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 39349 0.83 0.961177
Target:  5'- cCCUUUAAcUCUACAUUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 40736 0.68 1
Target:  5'- cCUUUUAAcUCCAUgcuAUUGUCAaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUG---UAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 42298 0.7 1
Target:  5'- cCUUUUAAUUCUAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 49983 0.69 1
Target:  5'- cCCUUUAAcUCCuaaggcauCAUCaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGu-------GUAG-------------CAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 52842 0.66 1
Target:  5'- uCCUUUAAcUCCAUAcCGUUGUUaAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAAcUAC- -5'
28259 3' -41 NC_005902.1 + 58602 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 63168 0.7 1
Target:  5'- cCCUUUAAUUCCuaaggcauCAUCaacaaugcaaaacGUCAUUGAa- -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUAG-------------CAGUAACUac -5'
28259 3' -41 NC_005902.1 + 63218 0.89 0.800724
Target:  5'- uCCUUUAAUUCUAUAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 69243 0.7 1
Target:  5'- cUCUUUAAUUCCAUGUUaUCAUUaacGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUAA---CUAC- -5'
28259 3' -41 NC_005902.1 + 71260 0.86 0.895086
Target:  5'- cCCUUUAAcUCUACAUCGUCAccGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaaCUAC- -5'
28259 3' -41 NC_005902.1 + 71681 0.69 1
Target:  5'- uCC-UUAAcUCCuaACA-CGUCAUUGAUGa -3'
miRNA:   3'- -GGaAAUUaAGG--UGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 72469 0.73 0.999983
Target:  5'- uCCUUUGAUUCCAUGUUGUUAauaaUGAc- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUa---ACUac -5'
28259 3' -41 NC_005902.1 + 73721 0.74 0.999955
Target:  5'- cCCUUUAAcUCUACAcUGUUAUUGAUa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 76425 0.87 0.872271
Target:  5'- cUCUUUAAUUCCACAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 81856 0.69 1
Target:  5'- cUCUUUAAcUCCuaaggCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 81996 0.68 1
Target:  5'- uCCUUUAAaUCCuaaggUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 82186 0.71 0.999999
Target:  5'- uCCUUUAAcUCCAUAUUGUUAUcaaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUA---ACUac -5'
28259 3' -41 NC_005902.1 + 85796 0.66 1
Target:  5'- uCCUUUAAcUCCACAUUGUaauaaugcuUUGGg- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAgu-------AACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.