miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 142059 0.74 0.999976
Target:  5'- uCCUUUAAUUUaACAcUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGgUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 139816 0.69 1
Target:  5'- cCUUUUAAcUCCAUGUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 137960 0.67 1
Target:  5'- aCCUUUAAcUUUAUAUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 137834 0.68 1
Target:  5'- uCCUUUAGcUCCuaaggCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 136730 0.8 0.990732
Target:  5'- uUCUUUAAcUCCAUGUUGUCAUUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUac -5'
28259 3' -41 NC_005902.1 + 134642 0.66 1
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGu----GUAGCAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 134099 0.82 0.977241
Target:  5'- uUCUUUAAUUUCAUAUUGUCAUUGuUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACuAC- -5'
28259 3' -41 NC_005902.1 + 131131 1.09 0.128058
Target:  5'- cCCUUUAAUUCCGCAUUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 131008 0.71 1
Target:  5'- cCCUUUAAUUCCAUGcUGUCAUcaacGAUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAa---CUAc -5'
28259 3' -41 NC_005902.1 + 130892 0.72 0.999996
Target:  5'- cCCUUUAAUUCUGCAUUGU---UGAUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAguaACUAc -5'
28259 3' -41 NC_005902.1 + 127846 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 127763 0.67 1
Target:  5'- cCCUcUAAUUCUACAUUGUUgucuuaggaGUUGGg- -3'
miRNA:   3'- -GGAaAUUAAGGUGUAGCAG---------UAACUac -5'
28259 3' -41 NC_005902.1 + 122835 0.73 0.999981
Target:  5'- uCCUUUAAUUCCACAcuuucaaugacguuUUGcaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGU--------------AGC--AGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 118826 0.75 0.999817
Target:  5'- cUCUUUAAcUCCuaagGCAUUGUUAUUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 118244 0.85 0.927579
Target:  5'- --gUUAAUUCUACAUUGUUAUUGAUGa -3'
miRNA:   3'- ggaAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 114321 1.15 0.062015
Target:  5'- cCCUUUAAUUCCACAUCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 113536 0.74 0.999967
Target:  5'- cCUUUUAAUUCCACAUUaUUAaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 111171 0.71 0.999999
Target:  5'- cCCUUUAAcUCCuaaugCGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 110250 0.83 0.96965
Target:  5'- cCCUUUAAUUCCACAUgucauuaacaaugcgUuguGUCAUUGAUGg -3'
miRNA:   3'- -GGAAAUUAAGGUGUA---------------G---CAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 110169 0.81 0.988422
Target:  5'- cCCUUUAAUUCCuaagGCAUUGUCAgaauauaaagugucaUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUAGCAGU---------------AACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.