miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 174665 0.77 0.99923
Target:  5'- cCCUUUAAUUCCAUAUUGUUAUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 173198 0.81 0.985503
Target:  5'- uCCUUUAAcUCCACAUCaucaaugacaaagcGUCAUUGAUa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAG--------------CAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 170071 0.68 1
Target:  5'- uCCUUUAAcUCCACAUCaUCAacGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGcAGUaaCUac -5'
28259 3' -41 NC_005902.1 + 169196 0.81 0.984149
Target:  5'- cCUUUUAAcUCUAUGUUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 169067 0.74 0.999967
Target:  5'- uUUUUAAUUCUugAUucuuaaggCGUCGUUGAUGa -3'
miRNA:   3'- gGAAAUUAAGGugUA--------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 166258 0.68 1
Target:  5'- aCUUUAAUaccUCCAUAUCGacugcgaccagcuacUgGUUGAUGa -3'
miRNA:   3'- gGAAAUUA---AGGUGUAGC---------------AgUAACUAC- -5'
28259 3' -41 NC_005902.1 + 163564 0.72 0.999997
Target:  5'- aCCUUUAAcUCaACAUUaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGgUGUAGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 162466 0.67 1
Target:  5'- uUUUUAAUUCCuaaggUGUUGUUGAUGg -3'
miRNA:   3'- gGAAAUUAAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 161774 0.69 1
Target:  5'- uCCUUUAAcaCCuaaggUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 159813 0.69 1
Target:  5'- cCCaUUAAcUCUACAccaUCGUCAaUGAUGc -3'
miRNA:   3'- -GGaAAUUaAGGUGU---AGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 157918 0.73 0.999994
Target:  5'- cCCUUUAAcUCCAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 156975 0.7 1
Target:  5'- --aUUAAcUCCACAUUGUUGcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 156463 0.74 0.999976
Target:  5'- uCCUUUAAUUUCAUG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 154780 0.75 0.999893
Target:  5'- cCUUUUAAcaUCACAUUGUCAUUGAUu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 152761 0.71 0.999999
Target:  5'- uCCUUUAAcUCUAUAUUGUCAUcGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUac -5'
28259 3' -41 NC_005902.1 + 151101 0.7 1
Target:  5'- cCCUUUAAccCCAUAUUGUUgaUGAUGu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGuaACUAC- -5'
28259 3' -41 NC_005902.1 + 148304 0.73 0.999994
Target:  5'- cCCUUUAAUUCCACAUCuUUAUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUAacuac -5'
28259 3' -41 NC_005902.1 + 146653 0.75 0.999817
Target:  5'- aCCUUUAAcUCUACAUUGUCGUUa--- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAAcuac -5'
28259 3' -41 NC_005902.1 + 143547 0.68 1
Target:  5'- cCUUUUAAcUCCACAUCauuGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAG---CAGUaACUac -5'
28259 3' -41 NC_005902.1 + 142102 0.89 0.800724
Target:  5'- cCCUUUAAUcCCACAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAaGGUGUAGCAGUAaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.