miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 63218 0.89 0.800724
Target:  5'- uCCUUUAAUUCUAUAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 122835 0.73 0.999981
Target:  5'- uCCUUUAAUUCCACAcuuucaaugacguuUUGcaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGU--------------AGC--AGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 157918 0.73 0.999994
Target:  5'- cCCUUUAAcUCCAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 106074 0.66 1
Target:  5'- uCCUUUAAcUUCACAcUGUCAUcaacGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 11182 0.85 0.932672
Target:  5'- cCCUUUAAaUCCACAUuguugaugcuuuaUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUA-------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 134099 0.82 0.977241
Target:  5'- uUCUUUAAUUUCAUAUUGUCAUUGuUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACuAC- -5'
28259 3' -41 NC_005902.1 + 110169 0.81 0.988422
Target:  5'- cCCUUUAAUUCCuaagGCAUUGUCAgaauauaaagugucaUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUAGCAGU---------------AACUAC- -5'
28259 3' -41 NC_005902.1 + 136730 0.8 0.990732
Target:  5'- uUCUUUAAcUCCAUGUUGUCAUUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUac -5'
28259 3' -41 NC_005902.1 + 154780 0.75 0.999893
Target:  5'- cCUUUUAAcaUCACAUUGUCAUUGAUu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 156463 0.74 0.999976
Target:  5'- uCCUUUAAUUUCAUG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 169067 0.74 0.999967
Target:  5'- uUUUUAAUUCUugAUucuuaaggCGUCGUUGAUGa -3'
miRNA:   3'- gGAAAUUAAGGugUA--------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 146653 0.75 0.999817
Target:  5'- aCCUUUAAcUCUACAUUGUCGUUa--- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAAcuac -5'
28259 3' -41 NC_005902.1 + 142102 0.89 0.800724
Target:  5'- cCCUUUAAUcCCACAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAaGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 15930 0.74 0.999971
Target:  5'- uCCUUUAAUUCCugggguauCAUuaauaacacucuacaUGUCGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUA---------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 76425 0.87 0.872271
Target:  5'- cUCUUUAAUUCCACAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 174665 0.77 0.99923
Target:  5'- cCCUUUAAUUCCAUAUUGUUAUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 142059 0.74 0.999976
Target:  5'- uCCUUUAAUUUaACAcUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGgUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 58602 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 29525 0.86 0.887749
Target:  5'- uCCUUUAAUUCCACggUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGuaGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 99682 0.81 0.986055
Target:  5'- cUCUUUAAUUCCACAUUGU---UGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAguaACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.