miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 163564 0.72 0.999997
Target:  5'- aCCUUUAAcUCaACAUUaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGgUGUAGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 157918 0.73 0.999994
Target:  5'- cCCUUUAAcUCCAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 146653 0.75 0.999817
Target:  5'- aCCUUUAAcUCUACAUUGUCGUUa--- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAAcuac -5'
28259 3' -41 NC_005902.1 + 29525 0.86 0.887749
Target:  5'- uCCUUUAAUUCCACggUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGuaGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 81856 0.69 1
Target:  5'- cUCUUUAAcUCCuaaggCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 28738 0.71 1
Target:  5'- gCCUUagauuaaggagUAAUUCCuaaaACAUUGUCAaUGAUGu -3'
miRNA:   3'- -GGAA-----------AUUAAGG----UGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 122835 0.73 0.999981
Target:  5'- uCCUUUAAUUCCACAcuuucaaugacguuUUGcaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGU--------------AGC--AGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 76425 0.87 0.872271
Target:  5'- cUCUUUAAUUCCACAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 15803 0.71 1
Target:  5'- uCCUUUAAcUCCuaagGCAUUGUUAaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 142102 0.89 0.800724
Target:  5'- cCCUUUAAUcCCACAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAaGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 58602 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 20184 0.72 0.999998
Target:  5'- cCCUUUAAcUgCACAUUGUUAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAgGUGUAGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 15930 0.74 0.999971
Target:  5'- uCCUUUAAUUCCugggguauCAUuaauaacacucuacaUGUCGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUA---------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 154780 0.75 0.999893
Target:  5'- cCUUUUAAcaUCACAUUGUCAUUGAUu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 110169 0.81 0.988422
Target:  5'- cCCUUUAAUUCCuaagGCAUUGUCAgaauauaaagugucaUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUAGCAGU---------------AACUAC- -5'
28259 3' -41 NC_005902.1 + 11182 0.85 0.932672
Target:  5'- cCCUUUAAaUCCACAUuguugaugcuuuaUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUA-------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 11128 0.68 1
Target:  5'- cCCUUUAAaUCCAUGUUGU---UGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAguaACUAC- -5'
28259 3' -41 NC_005902.1 + 161774 0.69 1
Target:  5'- uCCUUUAAcaCCuaaggUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 23358 0.69 1
Target:  5'- cCCUUUAAUUCUAUGUUGUUAaUGcaGUGu -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUaAC--UAC- -5'
28259 3' -41 NC_005902.1 + 37319 0.71 1
Target:  5'- cCCUUUAAcUCCAUGUUGUCAUc---- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAacuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.