miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 40736 0.68 1
Target:  5'- cCUUUUAAcUCCAUgcuAUUGUCAaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUG---UAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 28695 0.68 1
Target:  5'- cCCUUUAAcaCCACAUUuuacaaugcuuugaGUCAUaGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGUGUAG--------------CAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 143547 0.68 1
Target:  5'- cCUUUUAAcUCCACAUCauuGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAG---CAGUaACUac -5'
28259 3' -41 NC_005902.1 + 161774 0.69 1
Target:  5'- uCCUUUAAcaCCuaaggUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 49983 0.69 1
Target:  5'- cCCUUUAAcUCCuaaggcauCAUCaauaaugcuuuguGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGu-------GUAG-------------CAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 71681 0.69 1
Target:  5'- uCC-UUAAcUCCuaACA-CGUCAUUGAUGa -3'
miRNA:   3'- -GGaAAUUaAGG--UGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 23358 0.69 1
Target:  5'- cCCUUUAAUUCUAUGUUGUUAaUGcaGUGu -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUaAC--UAC- -5'
28259 3' -41 NC_005902.1 + 139816 0.69 1
Target:  5'- cCUUUUAAcUCCAUGUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 81856 0.69 1
Target:  5'- cUCUUUAAcUCCuaaggCGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 103833 0.69 1
Target:  5'- cCCUUUAAcUUUCAaagUGUCAUUGAUa -3'
miRNA:   3'- -GGAAAUU-AAGGUguaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 159813 0.69 1
Target:  5'- cCCaUUAAcUCUACAccaUCGUCAaUGAUGc -3'
miRNA:   3'- -GGaAAUUaAGGUGU---AGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 18697 0.69 1
Target:  5'- cCCUUUAAUUCCuaaagCaUCAUUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGugua-GcAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 42298 0.7 1
Target:  5'- cCUUUUAAUUCUAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAgCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 156975 0.7 1
Target:  5'- --aUUAAcUCCACAUUGUUGcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 69243 0.7 1
Target:  5'- cUCUUUAAUUCCAUGUUaUCAUUaacGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUAA---CUAC- -5'
28259 3' -41 NC_005902.1 + 151101 0.7 1
Target:  5'- cCCUUUAAccCCAUAUUGUUgaUGAUGu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGuaACUAC- -5'
28259 3' -41 NC_005902.1 + 63168 0.7 1
Target:  5'- cCCUUUAAUUCCuaaggcauCAUCaacaaugcaaaacGUCAUUGAa- -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUAG-------------CAGUAACUac -5'
28259 3' -41 NC_005902.1 + 24052 0.7 1
Target:  5'- cCCUUUAAUUCUacgACAUCaUCAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGG---UGUAGcAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 111171 0.71 0.999999
Target:  5'- cCCUUUAAcUCCuaaugCGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 16114 0.71 0.999999
Target:  5'- cCCUUUAAccccaaaCACGUCGUCggUGAUa -3'
miRNA:   3'- -GGAAAUUaag----GUGUAGCAGuaACUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.