miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 92710 0.66 1
Target:  5'- cCCcUUAAcUUCACAUCGUUGUUaAUGa -3'
miRNA:   3'- -GGaAAUUaAGGUGUAGCAGUAAcUAC- -5'
28259 3' -41 NC_005902.1 + 52842 0.66 1
Target:  5'- uCCUUUAAcUCCAUAcCGUUGUUaAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAAcUAC- -5'
28259 3' -41 NC_005902.1 + 106074 0.66 1
Target:  5'- uCCUUUAAcUUCACAcUGUCAUcaacGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 16081 0.66 1
Target:  5'- --gUUAAUUCUGCAUUGUUAauaaUGAUGc -3'
miRNA:   3'- ggaAAUUAAGGUGUAGCAGUa---ACUAC- -5'
28259 3' -41 NC_005902.1 + 85796 0.66 1
Target:  5'- uCCUUUAAcUCCACAUUGUaauaaugcuUUGGg- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAgu-------AACUac -5'
28259 3' -41 NC_005902.1 + 87303 0.66 1
Target:  5'- --gUUAAcUUCAUAUUGUCAcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 134642 0.66 1
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGu----GUAGCAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 127763 0.67 1
Target:  5'- cCCUcUAAUUCUACAUUGUUgucuuaggaGUUGGg- -3'
miRNA:   3'- -GGAaAUUAAGGUGUAGCAG---------UAACUac -5'
28259 3' -41 NC_005902.1 + 93488 0.67 1
Target:  5'- aCCUUUAAcUCUACAuuaUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGU---AGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 162466 0.67 1
Target:  5'- uUUUUAAUUCCuaaggUGUUGUUGAUGg -3'
miRNA:   3'- gGAAAUUAAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 36274 0.67 1
Target:  5'- cUCUUUAAUUUCACAUUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 137960 0.67 1
Target:  5'- aCCUUUAAcUUUAUAUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 16356 0.67 1
Target:  5'- cCUUUUAAUUCg----UGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGguguaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 40736 0.68 1
Target:  5'- cCUUUUAAcUCCAUgcuAUUGUCAaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUG---UAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 81996 0.68 1
Target:  5'- uCCUUUAAaUCCuaaggUGUUAUUGGUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 143547 0.68 1
Target:  5'- cCUUUUAAcUCCACAUCauuGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAG---CAGUaACUac -5'
28259 3' -41 NC_005902.1 + 28695 0.68 1
Target:  5'- cCCUUUAAcaCCACAUUuuacaaugcuuugaGUCAUaGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGUGUAG--------------CAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 17713 0.68 1
Target:  5'- cCUUUUAAcUCCACGUUG-CGaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCaGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 137834 0.68 1
Target:  5'- uCCUUUAGcUCCuaaggCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 166258 0.68 1
Target:  5'- aCUUUAAUaccUCCAUAUCGacugcgaccagcuacUgGUUGAUGa -3'
miRNA:   3'- gGAAAUUA---AGGUGUAGC---------------AgUAACUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.