miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 94765 0.8 0.990732
Target:  5'- cCCUUUAc-UUCACAUUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUuaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 174665 0.77 0.99923
Target:  5'- cCCUUUAAUUCCAUAUUGUUAUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 88765 0.76 0.999509
Target:  5'- cCCUUUAAUUCUAUAUUGUCAacaauacGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUaa-----CUAC- -5'
28259 3' -41 NC_005902.1 + 146653 0.75 0.999817
Target:  5'- aCCUUUAAcUCUACAUUGUCGUUa--- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAAcuac -5'
28259 3' -41 NC_005902.1 + 118826 0.75 0.999817
Target:  5'- cUCUUUAAcUCCuaagGCAUUGUUAUUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 154780 0.75 0.999893
Target:  5'- cCUUUUAAcaUCACAUUGUCAUUGAUu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 73721 0.74 0.999955
Target:  5'- cCCUUUAAcUCUACAcUGUUAUUGAUa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 169067 0.74 0.999967
Target:  5'- uUUUUAAUUCUugAUucuuaaggCGUCGUUGAUGa -3'
miRNA:   3'- gGAAAUUAAGGugUA--------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 113536 0.74 0.999967
Target:  5'- cCUUUUAAUUCCACAUUaUUAaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 15930 0.74 0.999971
Target:  5'- uCCUUUAAUUCCugggguauCAUuaauaacacucuacaUGUCGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUA---------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 142059 0.74 0.999976
Target:  5'- uCCUUUAAUUUaACAcUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGgUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 156463 0.74 0.999976
Target:  5'- uCCUUUAAUUUCAUG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 122835 0.73 0.999981
Target:  5'- uCCUUUAAUUCCACAcuuucaaugacguuUUGcaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGU--------------AGC--AGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 72469 0.73 0.999983
Target:  5'- uCCUUUGAUUCCAUGUUGUUAauaaUGAc- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUa---ACUac -5'
28259 3' -41 NC_005902.1 + 109656 0.73 0.999983
Target:  5'- uCCUUUAAUUCUAUGcUGUUAUUGGUa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 36166 0.73 0.999988
Target:  5'- cUCUUUAAcUCUACAUUGUCAUcaacGAUGu -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 1556 0.73 0.999991
Target:  5'- cCCUUUAAcUUCACAUCaUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGcAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 127846 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 58602 0.73 0.999994
Target:  5'- cCCUUUAAcUCUACG-CaUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 157918 0.73 0.999994
Target:  5'- cCCUUUAAcUCCAUGU-GUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAgCAGUAaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.