Results 101 - 120 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 177327 | 0.72 | 0.999728 |
Target: 5'- cCUUUAACACCUAAGUuuauuUGUAUAUagCAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCG-----AUAUAUGg-GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 118522 | 0.72 | 0.999728 |
Target: 5'- uUUUAAUcUUUGAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 131964 | 0.72 | 0.999728 |
Target: 5'- -gUUAACACCUAAaCUAUAUAUCUg- -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 114813 | 0.72 | 0.999652 |
Target: 5'- cCUUUAACACUUAGGUUAUAUAUg--- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 71211 | 0.72 | 0.999652 |
Target: 5'- uUUUAAUGCUUAAGCUAUAUACaCUc- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUG-GGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169551 | 0.72 | 0.999652 |
Target: 5'- -gUUAAUGCUUAAGCUAUAUACaUGCg -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162718 | 0.72 | 0.999652 |
Target: 5'- aUUUAccuuAUACCUAAGCUAcAUAUUCACu -3' miRNA: 3'- gAAAU----UGUGGAUUCGAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 135545 | 0.72 | 0.999652 |
Target: 5'- cCUUUAACACCUAAaCUAgAUACaCACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUaUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 177828 | 0.73 | 0.999558 |
Target: 5'- -aUUAACuuuGCCUAAGCUAUAUACaagugaGCa -3' miRNA: 3'- gaAAUUG---UGGAUUCGAUAUAUGgg----UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 52775 | 0.73 | 0.999558 |
Target: 5'- uUUUAACACCUAAGUUAUAUAa---- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUgggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 65754 | 0.73 | 0.999558 |
Target: 5'- cCUUUAACACCUGAaCUAUAUAUgaaugaaCACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGg------GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 24958 | 0.73 | 0.999558 |
Target: 5'- uCUUUAAUACCcGAGUcAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGaUUCGaUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 8175 | 0.73 | 0.999442 |
Target: 5'- --cUAACAUUUAAGCUAUAUACUUg- -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 98642 | 0.73 | 0.999442 |
Target: 5'- ----cAUACCUAAGCUAUAUACaagugagCACa -3' miRNA: 3'- gaaauUGUGGAUUCGAUAUAUGg------GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 144986 | 0.73 | 0.999301 |
Target: 5'- cCUUUAAUACUaAAGCUAUAUACaugauCACu -3' miRNA: 3'- -GAAAUUGUGGaUUCGAUAUAUGg----GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 178178 | 0.73 | 0.999301 |
Target: 5'- uUUUAACACCUGAuaUA-AUACCUGCa -3' miRNA: 3'- gAAAUUGUGGAUUcgAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 157182 | 0.73 | 0.999301 |
Target: 5'- -aUUAAUACCUAAGUUAUAUACa--- -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 37201 | 0.73 | 0.999301 |
Target: 5'- uUUUAAUACauauuUAAGCUAUAUAUUCACu -3' miRNA: 3'- gAAAUUGUGg----AUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 76657 | 0.73 | 0.99913 |
Target: 5'- cCUUUAACAUCUAAGUUugcUAUGCUUAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAu--AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 13400 | 0.73 | 0.99913 |
Target: 5'- --cUAAUACCUAAGCUAUAUAUgUg- -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGgGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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