miRNA display CGI


Results 81 - 100 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 92007 0.7 0.999962
Target:  5'- aCUUUuuaAAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAA---UUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 29571 0.71 0.999948
Target:  5'- uUUUAAUAUCcAAGCUAUAUAUUUACu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23313 0.71 0.999948
Target:  5'- --aUAACAUCUAAGCUAUAUGUaaGCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 8417 0.71 0.99993
Target:  5'- uUUUAACACCUAAaCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 136893 0.71 0.999906
Target:  5'- aUUUAACACCcAAGUUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 107921 0.71 0.999906
Target:  5'- cCUUUAuaaACuCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUug-UG-GAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51970 0.71 0.999906
Target:  5'- -----uUACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- gaaauuGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95588 0.71 0.999906
Target:  5'- -gUUAACAUCUAAGUUAUAUAUaCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 43846 0.71 0.999876
Target:  5'- uCUUUAACuuUUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGugGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 75824 0.71 0.999876
Target:  5'- cCUUUAACACCUAAauuaUAUAUACCg-- -3'
miRNA:   3'- -GAAAUUGUGGAUUcg--AUAUAUGGgug -5'
28261 3' -43 NC_005902.1 + 69228 0.71 0.999876
Target:  5'- cCUUUAACACCUAAGU---AUACUCc- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGauaUAUGGGug -5'
28261 3' -43 NC_005902.1 + 178798 0.71 0.999876
Target:  5'- --gUAGCACCUGAuaUuuuUAUACCUACu -3'
miRNA:   3'- gaaAUUGUGGAUUcgAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 167322 0.72 0.999838
Target:  5'- --gUAAUACCUAcAGCUuguuUACCCAUa -3'
miRNA:   3'- gaaAUUGUGGAU-UCGAuau-AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 160997 0.72 0.999838
Target:  5'- --gUAAUAUCUAAGCUAUAUACaaaUAUa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGg--GUG- -5'
28261 3' -43 NC_005902.1 + 138777 0.72 0.999838
Target:  5'- ---aAACAUCUAAGCUAUAUACa--- -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 48508 0.72 0.999789
Target:  5'- -gUUAAUAUCUAAGCcAUAUACUUGCu -3'
miRNA:   3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 130956 0.72 0.999789
Target:  5'- cCUUUAAUACUUAAGUUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 110913 0.72 0.999789
Target:  5'- cCUUUuAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAAuUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 113786 0.72 0.999789
Target:  5'- cCUUUAACAaCUAAGCUAUAUAUacaaACa -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGgg--UG- -5'
28261 3' -43 NC_005902.1 + 139069 0.72 0.999728
Target:  5'- aUUUAAagaaUUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUgug-GAUUCGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.