miRNA display CGI


Results 81 - 100 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 37771 0.8 0.940368
Target:  5'- uUUUAACACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 38412 0.85 0.793687
Target:  5'- -aUUAACAUCUAAGCUAUAcACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 39098 0.93 0.399469
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 39414 0.73 0.998925
Target:  5'- ---gAAUACCUAAGCUAUAUACg--- -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 40067 0.79 0.966173
Target:  5'- cCUUUAACACUUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 40671 0.69 0.999995
Target:  5'- cCUUUAACGuuUAAGCUAUAUAUaUAUg -3'
miRNA:   3'- -GAAAUUGUggAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 40969 0.93 0.428141
Target:  5'- cCUUUAAUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA--UGGGUG- -5'
28261 3' -43 NC_005902.1 + 41025 0.74 0.998045
Target:  5'- uUUUAAUACUUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 41852 0.68 0.999999
Target:  5'- cCUUUAACAUCUAAaCUAUAUACaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 41984 1.02 0.147684
Target:  5'- gUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 42241 0.84 0.822677
Target:  5'- -cUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 42979 0.83 0.866695
Target:  5'- cCUUUAACAUCUAAGCUAUAUAUaugaCCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG----GGUg -5'
28261 3' -43 NC_005902.1 + 43846 0.71 0.999876
Target:  5'- uCUUUAACuuUUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGugGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 44017 0.93 0.40889
Target:  5'- uUUUAACACCUAAGCUAUAUACaCGCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 45081 0.97 0.261724
Target:  5'- uUUUAACACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 46322 0.69 0.999997
Target:  5'- --aUAAgUACCcAAGCUAUAUAUUCACu -3'
miRNA:   3'- gaaAUU-GUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 46938 0.85 0.793687
Target:  5'- -gUUAAUACCUAAGCUAUAUGCaaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47237 0.96 0.297767
Target:  5'- cCUUUAACACCUAAGCUAUAUACaCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 48112 0.79 0.958658
Target:  5'- cCUUUAACAUUUAAGCUAUAUACaaaugagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.