miRNA display CGI


Results 81 - 100 of 392 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 21312 0.86 0.73129
Target:  5'- uUUUAACAUCUAAGCUAUAUACUCu- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 50212 0.86 0.709533
Target:  5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 54872 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAuAUGGGUg -5'
28261 3' -43 NC_005902.1 + 3077 0.9 0.564476
Target:  5'- aUUUAACACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 20282 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 147754 0.85 0.773464
Target:  5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 149800 0.86 0.752632
Target:  5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5'
28261 3' -43 NC_005902.1 + 173890 0.85 0.783657
Target:  5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 109918 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUAUAUGCaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 1147 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUGUAUACaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 116634 0.85 0.783657
Target:  5'- uUUUAACACCUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 172607 0.86 0.73129
Target:  5'- cCUUUAACACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 3024 0.9 0.553451
Target:  5'- -aUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 41984 1.02 0.147684
Target:  5'- gUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 30799 0.84 0.813208
Target:  5'- cCUUUAACAUCUAAGCUAUAUACgCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 167252 0.83 0.849792
Target:  5'- uUUUAACACCUAAGUUAUAUAUUCGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 85907 0.83 0.849792
Target:  5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 68936 0.84 0.813208
Target:  5'- uUUUAACACUUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 88298 0.84 0.803541
Target:  5'- -aUUAACACCUAAGCUAUAUGCaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 146595 0.84 0.803541
Target:  5'- --cUAACAUCUAAGCUAUAUACUUGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.