miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 51424 0.9 0.564476
Target:  5'- -gUUAAUAUCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 154580 0.88 0.642742
Target:  5'- uUUUAACccuuuACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 162391 0.96 0.305422
Target:  5'- cCUUUAACACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145947 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95946 0.93 0.390188
Target:  5'- cCUUUAACACUUAAGUUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 169513 0.92 0.46819
Target:  5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5'
28261 3' -43 NC_005902.1 + 162594 0.9 0.520798
Target:  5'- ---aAAUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95766 0.9 0.531605
Target:  5'- uUUUAACACUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 134163 0.82 0.882583
Target:  5'- aUUUAACAUCUAAGCUAuaUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 167252 0.83 0.849792
Target:  5'- uUUUAACACCUAAGUUAUAUAUUCGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 97438 0.87 0.68746
Target:  5'- cCUUUAACACCUAAGCUAUAcuUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAU--AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 105945 0.86 0.720457
Target:  5'- uUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 97177 0.85 0.773464
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 20282 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 170702 0.85 0.793687
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 109918 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUAUAUGCaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 42241 0.84 0.822677
Target:  5'- -cUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 61622 0.83 0.840979
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.