miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 147754 0.85 0.773464
Target:  5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 136047 0.94 0.354503
Target:  5'- cCUUUAACuCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 91859 0.9 0.564476
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 154580 0.88 0.642742
Target:  5'- uUUUAACccuuuACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 54872 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAuAUGGGUg -5'
28261 3' -43 NC_005902.1 + 34816 0.95 0.321183
Target:  5'- cCUUUAACACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 136570 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 169444 0.9 0.5414
Target:  5'- cCUUUAACACUUAAGCUGUAUauuuguuugcgacACCCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 85057 0.92 0.46819
Target:  5'- uUUUAACAUCUAGGCUAUAUACUUACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 45081 0.97 0.261724
Target:  5'- uUUUAACACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 173890 0.85 0.783657
Target:  5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 42241 0.84 0.822677
Target:  5'- -cUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 174464 0.83 0.87477
Target:  5'- uCUUUuuACAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49109 0.82 0.8974
Target:  5'- aCUUUAAUACCUAcaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUucGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 137776 0.84 0.831937
Target:  5'- uUUUAACACCUAAGCUAUAUAUaCAa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 97177 0.85 0.773464
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 46938 0.85 0.793687
Target:  5'- -gUUAAUACCUAAGCUAUAUGCaaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 146595 0.84 0.803541
Target:  5'- --cUAACAUCUAAGCUAUAUACUUGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.