miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 133676 0.89 0.586688
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 29091 0.89 0.586688
Target:  5'- cCUUUAAUAUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 29611 0.89 0.586688
Target:  5'- cCUUUAACAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 29214 0.89 0.597857
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 86392 0.89 0.597857
Target:  5'- uCUUUAACACCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 156790 0.88 0.620278
Target:  5'- --cUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 88566 0.88 0.63151
Target:  5'- cCUUUAACACCUAAGUUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 165889 0.88 0.63151
Target:  5'- cCUUUAACACCUAAGCUAUAUACg--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 154580 0.88 0.642742
Target:  5'- uUUUAACccuuuACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 155214 0.88 0.653964
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 172817 0.88 0.653964
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaguaagcaUCGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG---------GGUG- -5'
28261 3' -43 NC_005902.1 + 169125 0.88 0.653964
Target:  5'- cCUUUAACACCUAAGCUAUAUAUuuGu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUg -5'
28261 3' -43 NC_005902.1 + 54872 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAuAUGGGUg -5'
28261 3' -43 NC_005902.1 + 48255 0.87 0.665166
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 90006 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGUUAUAUAUgCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 127780 0.87 0.665166
Target:  5'- uUUUAACACUgAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 180829 0.87 0.676335
Target:  5'- --cUAACACCUAAGCgAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 63238 0.87 0.676335
Target:  5'- cCUUUAACcCCUAAGCUAUAUACUCGg -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 122644 0.87 0.676335
Target:  5'- uCUUUAACAUCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 18859 0.87 0.68746
Target:  5'- uUUUAACACCUAAGCUAUAUACgCu- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.