miRNA display CGI


Results 41 - 60 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 156433 0.9 0.520798
Target:  5'- uUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 136570 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 58535 0.9 0.520798
Target:  5'- gCUUUAACACUgAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 162594 0.9 0.520798
Target:  5'- ---aAAUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 60468 0.9 0.531605
Target:  5'- cCUUUAACACCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 22618 0.9 0.531605
Target:  5'- -gUUAACACCUAAGCUAUAuauuUACUCACg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95766 0.9 0.531605
Target:  5'- uUUUAACACUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 169444 0.9 0.5414
Target:  5'- cCUUUAACACUUAAGCUGUAUauuuguuugcgacACCCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 143645 0.9 0.542492
Target:  5'- -aUUGACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 119010 0.9 0.542492
Target:  5'- cCUUUAACuCCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 75904 0.9 0.542492
Target:  5'- cCUUUAAUACCUAAGCUAUAUACaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 3024 0.9 0.553451
Target:  5'- -aUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 3077 0.9 0.564476
Target:  5'- aUUUAACACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 107802 0.9 0.564476
Target:  5'- uCUUUAACAUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 91859 0.9 0.564476
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 51424 0.9 0.564476
Target:  5'- -gUUAAUAUCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 111232 0.89 0.575558
Target:  5'- uUUUAACACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 31418 0.89 0.575558
Target:  5'- cCUUUAAUACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 54052 0.89 0.575558
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 93988 0.89 0.575558
Target:  5'- aCUUUuuaAACAUCUAAGCUAUGUACUCACu -3'
miRNA:   3'- -GAAA---UUGUGGAUUCGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.