miRNA display CGI


Results 41 - 60 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 18859 0.87 0.68746
Target:  5'- uUUUAACACCUAAGCUAUAUACgCu- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 20063 0.68 0.999999
Target:  5'- cCUUUAACACaUAAGCcAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 20282 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 21169 0.79 0.966173
Target:  5'- cCUUUAACACUUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 21312 0.86 0.73129
Target:  5'- uUUUAACAUCUAAGCUAUAUACUCu- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 22618 0.9 0.531605
Target:  5'- -gUUAACACCUAAGCUAUAuauuUACUCACg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23222 0.75 0.995994
Target:  5'- --cUAAUAUCUAAGCUAUAUGCaaGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23258 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23289 0.81 0.929526
Target:  5'- cCUUUAAUACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23313 0.71 0.999948
Target:  5'- --aUAACAUCUAAGCUAUAUGUaaGCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23414 0.78 0.978214
Target:  5'- -gUUAACACCcAAGCUAUAUACaaACa -3'
miRNA:   3'- gaAAUUGUGGaUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23467 0.85 0.773464
Target:  5'- cCUUUAACACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23609 0.82 0.890128
Target:  5'- uCUUUAACACCUAAGCUA--UACaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUauAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 23833 0.7 0.99998
Target:  5'- aUUUAACAUUUAAGCUAUAUAUa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 24958 0.73 0.999558
Target:  5'- uCUUUAAUACCcGAGUcAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 25008 0.7 0.999972
Target:  5'- -cUUAACucuuuAUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 25121 0.66 1
Target:  5'- cCUUUAAC-UCUAuGCUAUAUAUaCACa -3'
miRNA:   3'- -GAAAUUGuGGAUuCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 26260 0.79 0.966173
Target:  5'- cCUUUAAUACUU-AGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAuUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 26493 0.7 0.999986
Target:  5'- -cUUAACAUCUAAacuGCUAUAUACaaACa -3'
miRNA:   3'- gaAAUUGUGGAUU---CGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 27664 0.75 0.995271
Target:  5'- -aUUAAUACCUAGGCUgcuAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGA---UAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.