miRNA display CGI


Results 21 - 40 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 10388 0.79 0.958658
Target:  5'- cCUUUAAUACUUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 11043 0.7 0.999962
Target:  5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5'
28261 3' -43 NC_005902.1 + 11284 0.68 0.999998
Target:  5'- uCUUUAACACUUAAGUgUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 11408 0.86 0.752632
Target:  5'- uCUUUAACACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 11496 0.87 0.69853
Target:  5'- uUUUAAUAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 12544 0.69 0.999995
Target:  5'- cCUUUAAUACCUAAaUUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 12827 0.69 0.999995
Target:  5'- cCUUUAACuCCUAAGUUAUAUAUaUAUa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 13184 1.08 0.071772
Target:  5'- cCUUUAACACCUAAGCUAUAUACCCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 13400 0.73 0.99913
Target:  5'- --cUAAUACCUAAGCUAUAUAUgUg- -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 14713 0.7 0.999986
Target:  5'- gUUUAACuuGCUUuuAGCUAUAUACCUAa -3'
miRNA:   3'- gAAAUUG--UGGAu-UCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 15152 0.84 0.831938
Target:  5'- uUUUAACAUgUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 15310 0.67 1
Target:  5'- -aUUAACACCUGAaUUAUAUAUgCAa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 15425 0.86 0.752632
Target:  5'- uCUUUAACACCUAAGCUAUAUAUaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 15479 0.7 0.999986
Target:  5'- -gUUAAUGCUUAAGCUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 16467 0.77 0.982879
Target:  5'- uUUUAACACCUAAaCUAUAcACUCGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 16519 0.68 0.999998
Target:  5'- --gUAACACCUGAGaUAUAUaGCUCAg -3'
miRNA:   3'- gaaAUUGUGGAUUCgAUAUA-UGGGUg -5'
28261 3' -43 NC_005902.1 + 16878 0.78 0.978214
Target:  5'- cCUUUAACACCUAAGCUAUAU-CaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAuGgg----UG- -5'
28261 3' -43 NC_005902.1 + 16890 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGCUAUgaacaaGUGUCUAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUA------UAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 18583 0.66 1
Target:  5'- -gUUAACuCCUAAGUUAUAUACa--- -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 18751 0.84 0.831938
Target:  5'- cCUUUAACACCUAAGUUAUAUACaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.