miRNA display CGI


Results 21 - 40 of 392 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 175879 0.67 1
Target:  5'- uUUUAAUuuuauuauugACCUGAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUG----------UGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 175614 0.69 0.999993
Target:  5'- cCUUUAAUACgUAAGCcGUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 174999 0.7 0.999986
Target:  5'- -gUUAAUA-CUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 174974 0.76 0.994445
Target:  5'- --cUAACACUUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 174596 0.83 0.849792
Target:  5'- -gUUAACACCUAAGCUAUAUACgaaugagCACa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 174464 0.83 0.87477
Target:  5'- uCUUUuuACAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 173890 0.85 0.783657
Target:  5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 173182 0.66 1
Target:  5'- -cUUAACuCCUAAGUUAUAUACaCGu -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 172817 0.88 0.653964
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaguaagcaUCGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG---------GGUG- -5'
28261 3' -43 NC_005902.1 + 172729 0.68 0.999999
Target:  5'- --aUAAUACCUAAGUUAUAUAUgUg- -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 172607 0.86 0.73129
Target:  5'- cCUUUAACACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 170850 0.79 0.962546
Target:  5'- cCUUUAACAUgUAAGCUAUAUACaaACu -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 170702 0.85 0.793687
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 170535 0.76 0.989907
Target:  5'- uUUUAACACCUAAaCUAUAUauacACUCACa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUA----UGGGUG- -5'
28261 3' -43 NC_005902.1 + 169979 0.7 0.99998
Target:  5'- -aUUAACccuuuAUCUAAGCUAUAUAUUCAUu -3'
miRNA:   3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 169551 0.72 0.999652
Target:  5'- -gUUAAUGCUUAAGCUAUAUACaUGCg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 169513 0.92 0.46819
Target:  5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5'
28261 3' -43 NC_005902.1 + 169444 0.9 0.5414
Target:  5'- cCUUUAACACUUAAGCUGUAUauuuguuugcgacACCCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 169126 0.79 0.966173
Target:  5'- uCUUUAACAUUUAAGCUAUAUAgaCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUG- -5'
28261 3' -43 NC_005902.1 + 169125 0.88 0.653964
Target:  5'- cCUUUAACACCUAAGCUAUAUAUuuGu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.