Results 21 - 40 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 183499 | 0.66 | 1 |
Target: 5'- ----uGCAUCcAAGCUAgauUACCUACa -3' miRNA: 3'- gaaauUGUGGaUUCGAUau-AUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 108930 | 0.66 | 1 |
Target: 5'- aUUUAACACCUAAauuuaCUAUu--CCUACa -3' miRNA: 3'- gAAAUUGUGGAUUc----GAUAuauGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 127472 | 0.66 | 1 |
Target: 5'- uCUUUAACACaUAAGCUAUAUAg---- -3' miRNA: 3'- -GAAAUUGUGgAUUCGAUAUAUgggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 4776 | 0.66 | 1 |
Target: 5'- uUUUAAC-CCUAcGCUAUAUACaaAUa -3' miRNA: 3'- gAAAUUGuGGAUuCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 49766 | 0.66 | 1 |
Target: 5'- ---cAACACCUAAaCUAuauauuuguuugcUAUACCUACu -3' miRNA: 3'- gaaaUUGUGGAUUcGAU-------------AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 18583 | 0.66 | 1 |
Target: 5'- -gUUAACuCCUAAGUUAUAUACa--- -3' miRNA: 3'- gaAAUUGuGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 180885 | 0.67 | 1 |
Target: 5'- cCUUUAACAUCUAAGCaAUA---UCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGaUAUaugGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 175879 | 0.67 | 1 |
Target: 5'- uUUUAAUuuuauuauugACCUGAGCUAUAUACa--- -3' miRNA: 3'- gAAAUUG----------UGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 134328 | 0.67 | 1 |
Target: 5'- cCUUUAACAUUUAAGC-AUAUACaaaugagCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGaUAUAUGg------GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 15310 | 0.67 | 1 |
Target: 5'- -aUUAACACCUGAaUUAUAUAUgCAa -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGgGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 76783 | 0.67 | 1 |
Target: 5'- ----uACAUUUAGGCUAUAUACaaACa -3' miRNA: 3'- gaaauUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 127717 | 0.67 | 1 |
Target: 5'- --aUAACGCCUuggGAGUUAaacUGUACUUACu -3' miRNA: 3'- gaaAUUGUGGA---UUCGAU---AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 81054 | 0.67 | 1 |
Target: 5'- uUUUAACAUCUAAGCUAUAcaauUAagCAUa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAU----AUggGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 36098 | 0.67 | 1 |
Target: 5'- cCUUUAACACCUAAGgUGUGguugaUgACa -3' miRNA: 3'- -GAAAUUGUGGAUUCgAUAUaug--GgUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 3383 | 0.67 | 1 |
Target: 5'- ----uACACCUAAGCUAUAcaUACa-ACa -3' miRNA: 3'- gaaauUGUGGAUUCGAUAU--AUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 153648 | 0.67 | 1 |
Target: 5'- aUUUAACACUUAAaCUAUAUACgaACa -3' miRNA: 3'- gAAAUUGUGGAUUcGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 49437 | 0.67 | 1 |
Target: 5'- uUUUAACACCUAAGUUAUAaauagggGCa-GCa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUa------UGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 90423 | 0.68 | 0.999998 |
Target: 5'- aCUUUAACAUCUAAGUgUAUAUAUaaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCG-AUAUAUGgg-UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 16519 | 0.68 | 0.999998 |
Target: 5'- --gUAACACCUGAGaUAUAUaGCUCAg -3' miRNA: 3'- gaaAUUGUGGAUUCgAUAUA-UGGGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 11284 | 0.68 | 0.999998 |
Target: 5'- uCUUUAACACUUAAGUgUAUAUACaaAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCG-AUAUAUGggUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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